PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g116890.2.1 | ||||||||
Common Name | LOC101246812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 39182.5 Da PI: 8.9864 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 171 | 231 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+k Solyc03g116890.2.1 171 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHSK 231 58***************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-28 | 165 | 231 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.925 | 166 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 168 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-33 | 171 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-24 | 172 | 229 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDL VPVKDEASNL IEELNRVNAE 60 NKKLTEMLTV MCQNYNSLRN QLTEYMSKQN SSTSGADQDQ NSDGSKKIKI ENNNNNNNNN 120 EIVKSSVQVL NSESSSSDED SSTKKPREEH IKTKTSRVYM RTEPSDTSLI VKDGYQWRKY 180 GQKVTRDNPS PRAYFKCSFA PTCPVKKKVQ RSVEDQSILV ATYEGEHNHS KVDTAGPVTT 240 TSPSSRFNPK NNTYAAAVMP RQTLTLDLAE PKTLQNDIKK VHSITSTSSA SGQKRKSPGT 300 DQQQQNRPEF QHFLIEQMAS SLTKDPSFQA ALAAAISGKF LQNNSNTKDK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-19 | 170 | 229 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11362 | 0.0 | callus| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g116890.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ654291 | 0.0 | Solanum lycopersicum JA-induced WRKY protein mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001303844.1 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A3Q7GHS3 | 0.0 | A0A3Q7GHS3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g116890.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-82 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g116890.2.1 |
Entrez Gene | 101246812 |
Publications ? help Back to Top | |||
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