PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g115450.1.1 | ||||||||
Common Name | LOC101264713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 446aa MW: 49632.6 Da PI: 8.3354 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 100 | 119 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ CgksF ++ L H++ Solyc03g115450.1.1 100 VCKECGKSFQSWKALFGHMK 119 6******************7 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 354 | 376 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k F++ L H r+H Solyc03g115450.1.1 354 HECPICYKIFPSGQALGGHKRSH 376 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.68 | 12 | 34 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.16E-10 | 12 | 34 | No hit | No description |
Pfam | PF13912 | 1.0E-4 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.452 | 12 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 14 | 34 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.16E-10 | 94 | 121 | No hit | No description |
SMART | SM00355 | 0.0078 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.762 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 100 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-8 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.97E-7 | 290 | 312 | No hit | No description |
SMART | SM00355 | 0.063 | 290 | 312 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 290 | 317 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-11 | 290 | 313 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 292 | 312 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.97E-7 | 349 | 376 | No hit | No description |
PROSITE profile | PS50157 | 8.891 | 354 | 376 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 354 | 376 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.8E-12 | 354 | 377 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 356 | 376 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MGYEDHEVLM KHVCKFCNKS FHCGRSLGGH MRSHMVNTTD GETSRKKLPA YIVSNSTTNN 60 SNRDVNLDMG NQDISYVLRN NPKKTSKFSQ DLVDTLLPKV CKECGKSFQS WKALFGHMKC 120 HSSSSSVEED SWNSVSESDT EAAAAAAAAA AAATNKKKRS SRKRYNMAPA ATSSSLTVAA 180 NGSSPCVSEI EHEQEEIAMS LIMLSRDVSN WVGNNHVTDQ CSDNNSQFLT KSELIKKVKN 240 GKKTEQGESS KSVTNGQKRN RTEVLDDEKK KKMKMENENR VVISDPKIKF ECTTCNKSFH 300 SYQALGGHRA SHKNSKGDQT CAATHIDLAK QIKTGDNETE FGQNCGSKKQ LKMHECPICY 360 KIFPSGQALG GHKRSHLIAE AKKNNHNQTV EVEKPTPEIK NFLDLNLPAP VEEEDSTHEQ 420 QHIEFQQWWI DSTHKHEQLL GLLSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g115450.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238568 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236489.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3Q7FT17 | 0.0 | A0A3Q7FT17_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g115450.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4481 | 22 | 41 | Representative plant | OGRP5450 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 1e-28 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g115450.1.1 |
Entrez Gene | 101264713 |
Publications ? help Back to Top | |||
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