PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g006910.2.1
Common NameLOC101267867
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 248aa    MW: 28034.1 Da    PI: 8.4862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g006910.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-1180130355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++   ++ Lr+llP       ++K s ++   +A +YIk++q
  Solyc03g006910.2.1  80 IIHRDIERQRRQEMAALYSSLRSLLPLqY---VKGKRSVSDHMHEAANYIKEMQ 130
                         5699***********************66...9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-876130No hitNo description
PROSITE profilePS5088812.68477129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1278149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1081151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-881130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFSLQGSDDL LIQILSNTCQ QNKSSLDAVM DFASTDTITR THIPPNINSQ KKIISKRKLS  60
THSNKNDGIA SDDHFKLKKI IHRDIERQRR QEMAALYSSL RSLLPLQYVK GKRSVSDHMH  120
EAANYIKEMQ GNIKELEKRR DLLMKSIRHG NENADKNNRF TDCTVTVSPW LQEGIEISIS  180
VDCEGKTFPL SKILGELLKQ GLNVVSCVSA KADQRSLYSI HTEACDMNNI DHLALQQKVI  240
DMINLDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g006910.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234146.10.0transcription factor bHLH120-like
TrEMBLA0A3Q7FDI60.0A0A3Q7FDI6_SOLLC; Uncharacterized protein
STRINGSolyc03g006910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-39bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]