PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g107140.1.1
Common NameLOC101255251
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 331aa    MW: 36664.7 Da    PI: 5.7975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g107140.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-102532931055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Solyc01g107140.1.1 253 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 293
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14242308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-12252297No hitNo description
PfamPF000105.7E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGACPNEQQL PSSGLPNFWT NHESNIGGSS  60
EVSIFSSQHH TNSSIYHFPT STNHFQPMLL TTSMTMEHLP PTNNLIEADA VEFLNKQVNN  120
DSIESGENIM SESVLHGKSL QLGREYDQMH QPESSKKRSQ SPVDHKNKRS VKPKKNMKSS  180
VADDEETGNN NNNNTVLHRQ SSFSCCSEDE SNVSSYDIYG LASSDNSKGV SLPNGKSRAN  240
RGSATDPQSL YARKRRERIN ERLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  300
SDDLWMYSPI AYNGMDIGLD LKIGIPNPKP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g107140.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231386.10.0transcription factor bHLH84-like
TrEMBLA0A3Q7FCB90.0A0A3Q7FCB9_SOLLC; Uncharacterized protein
STRINGSolyc01g107140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-55bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]