PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g096470.2.1

Common Name

LOC101266671

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 344aa MW: 37864.8 Da PI: 9.7649

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g096470.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.9	2e-16	44	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++++r + ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Solyc01g096470.2.1 44 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARVYstksPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 128 5***********************************66666311156778**************99984.....57**9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.6E-20	42	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDKEAANHHQ NHEISNKDEF SPRIKPLQNY HVPTGNSDRL KRDEWSEGAV SCLLEAYEAK 60 WILRNRAKLK GQDWEDVAKH VSARVYSTKS PKTQTQCKNK IESMKKRYRS ESATAADASS 120 WPLYPRLDLL LRGNNASAAS SSLIPPPPLP PNTNCVIDAV EPPPQQPILL PPPPATLPPP 180 PPLPPSPALP FGNGDQNSHG SNGLDRGIKE DILMDAKLSD NAAAPDQKNA TATNSSSTPA 240 LYSDNKSKSK LRSKNKRKRA VEGWEIGESI RLLAEVVVRS EQARMETMRD IERMRAEAEA 300 KRGEMDLKRT EIIANTQLEI AKLFASITKG SVDSSLRIGR SSS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDKEAANHHQ NHEISNKDEF SPRIKPLQNY HVPTGNSDRL KRDEWSEGAV SCLLEAYEAK  60
WILRNRAKLK GQDWEDVAKH VSARVYSTKS PKTQTQCKNK IESMKKRYRS ESATAADASS  120
WPLYPRLDLL LRGNNASAAS SSLIPPPPLP PNTNCVIDAV EPPPQQPILL PPPPATLPPP  180
PPLPPSPALP FGNGDQNSHG SNGLDRGIKE DILMDAKLSD NAAAPDQKNA TATNSSSTPA  240
LYSDNKSKSK LRSKNKRKRA VEGWEIGESI RLLAEVVVRS EQARMETMRD IERMRAEAEA  300
KRGEMDLKRT EIIANTQLEI AKLFASITKG SVDSSLRIGR SSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.11006	0.0	callus\| leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	5600858	0.0

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g096470.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238911	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-140o23 map 1, complete sequence
GenBank	AC239436	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-309d12 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230030.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A3Q7ELS4	0.0	A0A3Q7ELS4_SOLLC; Uncharacterized protein
STRING	Solyc01g096470.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20
Representative plant	OGRP4409	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-88	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Solyc01g096470.2.1
Entrez Gene	101266671

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]