PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.K043500.1.p

Common Name

SORBI_K043500

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB

Protein Properties

Length: 286aa MW: 29893.5 Da PI: 9.3786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.K043500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll ++v+q+G ++W++I++ ++ gR++k+c++rw + Sobic.K043500.1.p 18 KGSWSPEEDALLTRLVEQHGAHRWSLISAAIP-GRSGKSCRLRWCNQ 63 799***************************.*********985 PP
2	Myb_DNA-binding	55.6	1.2e-17	72	114	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed l++ a+ ++G++ W+tIar ++ gRt++++k++w++ Sobic.K043500.1.p 72 PFTPHEDALILAAHSRYGNK-WATIARLLP-GRTDNSIKNHWNSN 114 89****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.401	13	68	IPR017930	Myb domain
SuperFamily	SSF46689	1.46E-31	15	111	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-17	17	66	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-17	18	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-25	19	71	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-15	20	62	No hit	No description
PROSITE profile	PS51294	19.153	69	119	IPR017930	Myb domain
SMART	SM00717	3.3E-15	69	117	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-12	72	115	No hit	No description
Pfam	PF00249	1.5E-14	72	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-23	72	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKNPAPASSS SVAVEVKKGS WSPEEDALLT RLVEQHGAHR WSLISAAIPG RSGKSCRLRW 60 CNQLSPDVHH RPFTPHEDAL ILAAHSRYGN KWATIARLLP GRTDNSIKNH WNSNLRRCRR 120 RAAAAAAAAA SRAAAAAGPC IAIGPQQVQD SDDVVPPPAA AAESEHHHSP QQLVAVVAAA 180 GLGGGNSSVL PAGTATAEAE PSLSLSLGLP LPAEEPGAAA DEERRNSQQG HGQASPPVTL 240 QQGEGNAQLL AVVRQMVREE VQRQTGQLAY SLMAAAAAKA KGHHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-36	15	117	1	103	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.K043500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU942485	1e-179	EU942485.1 Zea mays clone 1509544 mRNA sequence.
GenBank	KJ727524	1e-179	KJ727524.1 Zea mays clone pUT5383 MYB transcription factor (MYB127) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021306304.1	0.0	transcription factor MYB44
TrEMBL	A0A120GUN5	0.0	A0A120GUN5_SORBI; Uncharacterized protein
STRING	Sb0088s002210.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13544	27	31
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-49	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Sobic.K043500.1.p