PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G215100.2.p
Common NameSb10g026150, SORBIDRAFT_10g026150
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 475aa    MW: 50875.8 Da    PI: 6.3249
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G215100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16.1e-15134193155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sobic.010G215100.2.p 134 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 193
                           57*******************666664477446*************************98 PP
2AP247.44.8e-15236287155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sobic.010G215100.2.p 236 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 287
                           57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.94E-21134203No hitNo description
SuperFamilySSF541712.09E-17134203IPR016177DNA-binding domain
PfamPF008475.9E-12134193IPR001471AP2/ERF domain
SMARTSM003807.1E-29135207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-16135202IPR001471AP2/ERF domain
PROSITE profilePS5103219.124135201IPR001471AP2/ERF domain
PRINTSPR003671.9E-6136147IPR001471AP2/ERF domain
CDDcd000182.01E-23236297No hitNo description
SuperFamilySSF541716.34E-18236297IPR016177DNA-binding domain
PfamPF008475.9E-10236287IPR001471AP2/ERF domain
SMARTSM003801.5E-33237301IPR001471AP2/ERF domain
PROSITE profilePS5103219.045237295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18237296IPR001471AP2/ERF domain
PRINTSPR003671.9E-6277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAAPLG DEQGTVEESP KMVEDFLGGV  60
GGAGAPPAAA TAAEDHQLVC GELGSITAGF LRHYPAPGTT VENPGAVTVA AMSTDVAESD  120
QARRPAETFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA  180
ARAYDLAALK YWGATTTTNF PVSNYEKELE EMKSMTRQEF IASLRRKSSG FSRGASIYRG  240
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD  300
VDSILNSDLP VGGGAAGRAS KFPLDSLQPG SAAAMIAGAA SQAMPPSEKD YWSLLALHYQ  360
QQQQQQQFPA SAYEAYGSGV NVDFTMGTSS HSSSNTGSGV MWGTTTGAMG QQDSSSSKQG  420
NGYASNIPYA AAAAAMVSGS AGYEGSTGNN GTWVTSSTST STAPQYYNYL FGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.170230.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G215100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437394.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-128AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLC5Z7850.0C5Z785_SORBI; Uncharacterized protein
STRINGSb10g026150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-123AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]