PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G090800.1.p
Common NameSb10g007890, SORBIDRAFT_10g007890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 290aa    MW: 31047.7 Da    PI: 6.3172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G090800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.58.6e-26101422128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atg 87 
                            pGf F P+d+++vv+yL +++ g++l+l+  i + d +++ Pw+L  + ++++++ +fF+  + k+++g+r++r  +  g+W+  +t 
  Sobic.010G090800.1.p  10 LPGFVFAPEDSDVVVHYLLPRMLGQPLPLDGLIVDEDPLSAPPWELL-ERNGRREDAFFFALGQAKSSKGSRQKRtCAGGGFWNgeKTC 97 
                           69***************************999**************7.445677899******************77789***844454 PP

                   NAM  88 kdkevlsk..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                            d e l+   + e+ + kk L f +g    +kg +t Wvmhey++
  Sobic.010G090800.1.p  98 VDGEKLHVpgGAEVAWRKKALSFQEGggGGEKGGSTGWVMHEYAI 142
                           45444444557777999*******753488999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-335161IPR003441NAC domain
PROSITE profilePS5100529.9319161IPR003441NAC domain
PfamPF023654.8E-1511141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MELPPVLGFL PGFVFAPEDS DVVVHYLLPR MLGQPLPLDG LIVDEDPLSA PPWELLERNG  60
RREDAFFFAL GQAKSSKGSR QKRTCAGGGF WNGEKTCVDG EKLHVPGGAE VAWRKKALSF  120
QEGGGGGEKG GSTGWVMHEY AITAPDHLAE SQLRLYRIRF SGHGKKRKQR GDGGGGAGDS  180
CGDVPARNEA RRRRVAEDAD ALLHMSSPPP QQPSSSSTVL IGHSCINGAD DHHHHHAAPA  240
TLLAPGIVDT NSDSLGSIDI DELFRLVENY PSPNPRVSPA ATGYDGAHLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-12714213140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G090800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438091.11e-168uncharacterized protein LOC8065510
TrEMBLA0A1W0VS350.0A0A1W0VS35_SORBI; Uncharacterized protein (Fragment)
STRINGSb10g007890.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-12NAC domain containing protein 83