PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G006300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 525aa    MW: 57040.3 Da    PI: 7.3992
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G006300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-083383751954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Sobic.010G006300.1.p 338 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 375
                           554459******************************88 PP
2BELL103.41.6e-33194262472
                  BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           el+++ka+Lls++eeVd+rY++y+eq+++v  sFeavag g++++Yt+lAl+a+SrhFrcL+da++ q+
  Sobic.010G006300.1.p 194 ELERRKARLLSMVEEVDRRYRRYREQMRAVEVSFEAVAGAGASQVYTRLALRAMSRHFRCLRDALVAQV 262
                           899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-56125260IPR006563POX domain
PfamPF075263.2E-43131258IPR006563POX domain
PROSITE profilePS5007111.71316379IPR001356Homeobox domain
CDDcd000867.49E-12319380No hitNo description
SMARTSM003894.0E-9319383IPR001356Homeobox domain
SuperFamilySSF466893.29E-17320387IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27322385IPR009057Homeodomain-like
PfamPF059202.5E-17336375IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAVHHPHLLD FSPPPNTVAM EAPPAPHFDH GGHHHHHLLG LHVDGGVGMS VGGGVPHRAL  60
ADDDTVAAWA PQAAVSLSLY NYDNTAGGSS SSLFGHDEPQ FGAMPPAAAL ALPNHQQLPT  120
TTSSMQQPFQ LRSSKYLAPV QDLLSEFCSL EGDLLHAMNK RAPRAGNKWD DVETSSSSSG  180
LWGHPSLSSM DLLELERRKA RLLSMVEEVD RRYRRYREQM RAVEVSFEAV AGAGASQVYT  240
RLALRAMSRH FRCLRDALVA QVRALRKAMG ERDGGPGAAA AATAAGATKG DTPRLKVLDQ  300
CLRQQRAFQH PGTIENYPWR PQRGLPERAV AVLRAWLFEH FLHPYPNDVD KHILARQTGL  360
SRSQVSNWFI NARVRLWKPM IEEMYTEEVN QKSNATPQNP SGGGVIKPEQ MSTTAVPAAI  420
GGDHSHFLAT SAGNPSSSMI SSSILMTAAD CGGSGGGDHL FSSYPSMHRS HGGAVSLTLG  480
LQQQPFVSTM MHHQRPLMLH GDEQEPVLPY RDLMGSQLLH DFAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15325383563Homeobox protein Meis2
4xrm_B1e-15325383563Homeobox protein Meis2
5bng_A1e-15325383159Homeobox protein Meis2
5bng_B1e-15325383159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.86870.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G006300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399090.0BT039909.1 Zea mays full-length cDNA clone ZM_BFc0050K05 mRNA, complete cds.
GenBankKJ7282860.0KJ728286.1 Zea mays clone pUT6565 HB transcription factor (HB38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436343.20.0homeobox protein BEL1 homolog
SwissprotQ388971e-102BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLC5Z2790.0C5Z279_SORBI; Uncharacterized protein
STRINGSb10g000800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-86TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]