PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G238200.1.p
Common NameSb09g029050, SORBIDRAFT_09g029050
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 273aa    MW: 29083.5 Da    PI: 6.1549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G238200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.73.2e-25110171159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC ++k+v+r++ dp + +++Y+g H++ 
  Sobic.009G238200.1.p 110 LDDGLSWRKYGQKDILGAKYPRAYFRCTYRhsqGCLATKHVQRADGDPLLHDVVYHGAHTCA 171
                           58**************************998899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-2599172IPR003657WRKY domain
SuperFamilySSF1182906.54E-24105171IPR003657WRKY domain
PROSITE profilePS5081121.333105168IPR003657WRKY domain
SMARTSM007742.1E-37110172IPR003657WRKY domain
PfamPF031069.3E-24111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDGYGSYGGE KSALASELAQ VLAMVRELEA RMDQDPLPAA ARELCAELAS SVDRSIRIAR  60
SCCVDSPASG SGSPRSDGGN AGAAQSKRRK GTPCVRRQLR AASVQDAAAL DDGLSWRKYG  120
QKDILGAKYP RAYFRCTYRH SQGCLATKHV QRADGDPLLH DVVYHGAHTC AQAAHPSAQQ  180
LRQELQLQPG HGAQEDQASP LALETEGLRA ALLEPMTPYS FATVAGAGAG ASAGADFAGW  240
CPLLSPTALD WQFEELFTNA MEPFQWDLYT AN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19110170868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G238200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586191e-102KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440286.10.0probable WRKY transcription factor 53
TrEMBLC5YVZ90.0C5YVZ9_SORBI; Uncharacterized protein
STRINGSb09g029050.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.18e-33WRKY DNA-binding protein 30