PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G152100.1.p
Common NameSb09g021580, SORBIDRAFT_09g021580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 268aa    MW: 27904.2 Da    PI: 8.2139
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G152100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.51.2e-12188233550
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                           +r++r++kNRe+A rsR RK+a+++eLe  v +Le+e  +L  e e
  Sobic.009G152100.1.p 188 QRQKRMIKNRESAARSRDRKQAYVAELESQVMQLEEEQAELLREQE 233
                           89************************************99987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-6184246IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53186238IPR004827Basic-leucine zipper domain
PfamPF001704.8E-11187233IPR004827Basic-leucine zipper domain
CDDcd147071.24E-16188233No hitNo description
SuperFamilySSF579591.13E-10188238No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-12189241No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASSRVMASS SPPQHGAGSS SSDLARFRSS SGIGSMNMDD IIRNIYGPDA VNAAAGAGPA  60
EPSPAAAAAA PEAAAAAVAR RTSEEVWKEI SAAGGLSAPV LLPPPPAACS GTGGSRGGAA  120
EMTLEDFLAR DSCARAAVLE GNMALGFPDA DGGDAAGSGV AGGVGVGGGR GSTRKRALLD  180
PADRAVMQRQ KRMIKNRESA ARSRDRKQAY VAELESQVMQ LEEEQAELLR EQEDRRQNRL  240
KELIERVFPV IRKKSSQDLR RTNSMEW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.130600.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00648PBMTransfer from LOC_Os05g36160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G152100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439866.10.0G-box-binding factor 4 isoform X1
SwissprotQ0JHF12e-57BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLC5YYQ00.0C5YYQ0_SORBI; Uncharacterized protein
STRINGSb09g021580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Representative plantOGRP9845410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-16bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]