PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G137100.1.p

Common Name

Sb09g020320, SORBIDRAFT_09g020320

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 655aa MW: 68865.4 Da PI: 8.853

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G137100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.4	1.6e-13	177	238	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ + e a+l+++ Sobic.009G137100.1.p 177 EEDKRRTARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIAAENATLRQK 238 5677899********************************99***********999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-14	176	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-11	178	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.128	179	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.31E-11	181	239	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.5E-16	181	239	No hit	No description
CDD	cd14704	6.30E-20	182	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MAEPALLDPS SAFDLRHYPA HIFDPDLPLD AGGLPLGEFA GDEGCDGLDF DLPVDFSIDD 60 FLLRSPDRGD DGDDSGEGSA AGSGPTASSS ASPATSGANS AVANAGVHEV KHEDSDEGRS 120 GAAPNWSLKR KQASPGGAIS DGAKCRRSGD GELSPSASAS RAVAEDSDER CAGGEEEEDK 180 RRTARLMRNR ESAQLSRQRK KRYVEELEEK VKSMHSVIND LNSKISFIAA ENATLRQKLG 240 GAGVSGPPSG VYPPPPLPGI HFPWVPGYAM RPHGSHVPLV PIPRLKPQQA AAAGKVSKKP 300 EVKKSADSKS KTKTKTKKVA SISLLGLLFV ALVFGAFVPG FNHSLGMRGM SDNMMFGNFG 360 HSDARVFSVT NHGKGPKGGL NSSDVISTDP GMITGHADGA GQKHRAANNS SEILPALLYV 420 PRNGKHVKIN GNLIIHSVLA SEKAVAHKAS NGQSVKDRKE TSVAIARYLS PPGTDLNSKE 480 TLPPDAPLPQ WFREGMEGPV LNSGMCSEVF QFDISAASAK SGGIIPASPT VNSSSVNATQ 540 KIPKPAPAFG GKLKNRRIMY NEAIPLTGKT VNNTEPRSFN STSESSKVPD SKPASSVIVS 600 VLADPREAGN GDGDPRVSTK PLSRIFVVVL LDGVRYVTYS CTLPFKSATP HLVN*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MAEPALLDPS SAFDLRHYPA HIFDPDLPLD AGGLPLGEFA GDEGCDGLDF DLPVDFSIDD  60
FLLRSPDRGD DGDDSGEGSA AGSGPTASSS ASPATSGANS AVANAGVHEV KHEDSDEGRS  120
GAAPNWSLKR KQASPGGAIS DGAKCRRSGD GELSPSASAS RAVAEDSDER CAGGEEEEDK  180
RRTARLMRNR ESAQLSRQRK KRYVEELEEK VKSMHSVIND LNSKISFIAA ENATLRQKLG  240
GAGVSGPPSG VYPPPPLPGI HFPWVPGYAM RPHGSHVPLV PIPRLKPQQA AAAGKVSKKP  300
EVKKSADSKS KTKTKTKKVA SISLLGLLFV ALVFGAFVPG FNHSLGMRGM SDNMMFGNFG  360
HSDARVFSVT NHGKGPKGGL NSSDVISTDP GMITGHADGA GQKHRAANNS SEILPALLYV  420
PRNGKHVKIN GNLIIHSVLA SEKAVAHKAS NGQSVKDRKE TSVAIARYLS PPGTDLNSKE  480
TLPPDAPLPQ WFREGMEGPV LNSGMCSEVF QFDISAASAK SGGIIPASPT VNSSSVNATQ  540
KIPKPAPAFG GKLKNRRIMY NEAIPLTGKT VNNTEPRSFN STSESSKVPD SKPASSVIVS  600
VLADPREAGN GDGDPRVSTK PLSRIFVVVL LDGVRYVTYS CTLPFKSATP HLVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	201	KRRTARLMRNRESAQLSRQRKKR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269\|PubMed:22084314}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G137100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067808	0.0	BT067808.1 Zea mays full-length cDNA clone ZM_BFc0160D20 mRNA, complete cds.
GenBank	EU957545	0.0	EU957545.1 Zea mays clone 1597058 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441096.1	0.0	bZIP transcription factor 39
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	C5YXU6	0.0	C5YXU6_SORBI; Uncharacterized protein
STRING	Sb09g020320.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45
Representative plant	OGRP2171	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-87	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.009G137100.1.p
Entrez Gene	8085134

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]