PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G160600.1.p
Common NameSb08g020800, SORBIDRAFT_08g020800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 768aa    MW: 82644 Da    PI: 6.9327
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G160600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.41.8e-15455495242
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                           ++k+C+CkkskClk+YCeCfaag++Cse C+C +C N++++
  Sobic.008G160600.1.p 455 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCIGCLNNQSH 495
                           689**********************************9975 PP
2TCR51.32.4e-16540579140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN  
  Sobic.008G160600.1.p 540 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNAF 579
                           589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.0E-17454495IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.129455580IPR005172CRC domain
PfamPF036381.5E-11457492IPR005172CRC domain
SMARTSM011146.0E-17540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.6E-12542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MDTPDRPRAA AAAGFEDSPV FNFINNLSPI PPPKPLDTAH NVQLFKSSDL APVSSIFASP  60
HVNPAKETKV LIRDESVQLP QELHSPSSVR TRICPSGSFR MIRCKDIVSE SCNITCQLNE  120
ASIDSSDHTS NSTGQLSQSI QDAAGSMESN KDQCGDGKTD LTMSQECTGL EGMNLDESGL  180
DKMDSSHSGI VVHENQLSEQ NNDEPAAYNG DYMITHQSSS DMLTLAVTSG TETQPVDDTQ  240
KSDDPYSCES FLDDQPSGYC AQNSVHEPHL YWTGAVEGAA VAYTPQTLPG ALQSQLMPCN  300
KLNEPKDHMP TEQNALPQHL RGMRRRSLFN EKAGVSNKGV DKASDHHPVN STTPKCKTIS  360
GDNSKPLRTP PCALPGIGLH LNALAAIPKE KLEIQSTINE LSNLIGPSGS SPAPSEQIII  420
NDDFNQTTDV ATAEASSQGS PKKKRQKFDN GDGTSCKRCS CKKSKCLKLY CECFAAGVYC  480
SEPCSCIGCL NNQSHTETVL STRQQIESRN PLAFAPKVIH TSESGLELGD FSNKTPASAR  540
HKRGCNCKKS SCLKKYCECF QGGVGCSISC RCEGCKNAFG KREGAAVLGI EEPKQGLEKK  600
NVCVKEEKSE IDKQLVIYQT ADTAPAENVL TTPSMVECRP LACLPPPSSK KSSKKPRSST  660
KLTGHPSRLC NLQAPPKTDI MLSPFENYPE MVLGDSTSDI LNGNSSPQTS VKVVSPNKKR  720
ISPPRMGTRL SPICTIGRKL ILKSIPSFPS LGGDVNNEDP KAKLPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1545957714120Protein lin-54 homolog
5fd3_B2e-1545957714120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.142610.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G160600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9722050.0EU972205.1 Zea mays clone 377413 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443515.10.0protein tesmin/TSO1-like CXC 2
TrEMBLC5YRH00.0C5YRH0_SORBI; Uncharacterized protein
STRINGSb08g020800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-81Tesmin/TSO1-like CXC domain-containing protein