PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G148700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 508aa    MW: 57045.6 Da    PI: 9.4046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G148700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-187981100
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffkv+     +k+g +++pkkf++++ +k   s +++l+ ++g++++v++  + ++++ vl++GW eF++a +L+ gD +vF+   + +
  Sobic.008G148700.1.p   7 FFKVM--IGDFKNG-MTIPKKFVANIREK--ISEQVILKVPNGKTYTVEV-AEEQQNELVLRSGWAEFASAYELELGDLLVFTN--NGN 87 
                           78888..7788888.********988655..6778***************.5777778*************************4..466 PP

                           E..EEEEE-SS CS
                    B3  90 felvvkvfrks 100
                            +l+v++f++s
  Sobic.008G148700.1.p  88 SHLTVRIFDRS 98 
                           667*****985 PP
2B353.34.9e-17403504499
                           E-..-HHHHT..T-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   4 vltpsdvlks..grlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           v+++s+v ++  + l ++  +a+e+     gg+k+ s+ ++l+  +  +We  +  +k++++ + +kGW++Fv +n+L+ gD+++F l+
  Sobic.008G148700.1.p 403 VMKNSNVDSRrmCTLGISSAYAKEYllgggGGEKQLSMRMKLRR-KDDEWEAGF-QDKYGRQQIVGKGWRKFVTDNRLRLGDICLFNLV 489
                           566666666655999*************9988888888888766.7799*****.588999999************************* PP

                           SS.SEE..EEEEE-S CS
                    B3  86 gr.sefelvvkvfrk 99 
                           ++ +  ++ v+v+rk
  Sobic.008G148700.1.p 490 KNtKMLTMDVHVIRK 504
                           999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-223100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-213100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-23596No hitNo description
SMARTSM010193.1E-14798IPR003340B3 DNA binding domain
PfamPF023622.0E-16797IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5061998IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-8206273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.754214345IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-5302335IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-8307341IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-16393504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15395495IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-14398503No hitNo description
SMARTSM010196.7E-10400505IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729402505IPR003340B3 DNA binding domain
PfamPF023624.0E-13403504IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDDPKCFFKV MIGDFKNGMT IPKKFVANIR EKISEQVILK VPNGKTYTVE VAEEQQNELV  60
LRSGWAEFAS AYELELGDLL VFTNNGNSHL TVRIFDRSAC EKELSCVLLD SMPCMQERKC  120
SHGKQMQSPT GKRLAVGSPG NSKTPKMNPT DSPSQKKTEH VPSSEGIHQE PINLGASQKL  180
IKSCIALPAG CSMTSEQEAK VIALEQKIQP KIPFYITAMY KESLASGILQ ISKEYVMEHV  240
EHLANENGTI QLCQFDASNV WTINLYVTSD PHYALPDSRA LPCAWGTRQN LRRTGRGTSR  300
RPGHDTVSTG WLGFIRDNKL GEGEICIFQP ARSKNDRVKL IFRTLEESRC LQPPGFVSST  360
KRHGVAKPPY MLPWKTTLTD EQRSDVEERL GAIRSEIPAY VAVMKNSNVD SRRMCTLGIS  420
SAYAKEYLLG GGGGEKQLSM RMKLRRKDDE WEAGFQDKYG RQQIVGKGWR KFVTDNRLRL  480
GDICLFNLVK NTKMLTMDVH VIRKRSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G148700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442423.20.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1B6PDR80.0A0A1B6PDR8_SORBI; Uncharacterized protein
STRINGSb08g019880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-17B3 family protein