PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G147800.1.p
Common NameSb08g019780, SORBIDRAFT_08g019780
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 317aa    MW: 34396.9 Da    PI: 4.8381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G147800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-112422821055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Sobic.008G147800.1.p 242 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 282
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-14232298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12235294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-12241286No hitNo description
PfamPF000104.1E-8242282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEAGGLITEV GWTEFDFLSH GEESEAMMAQ LLGAFPSHAD EGQHELLHWP DQASNAYSDS  60
IPPSCGGYYF LSNSNEALGS SSCTAPTDAL PFQEEHGAGA AEYLDVTANH SFNCYGNGDP  120
SYEDLDDPMS VSMLGSVSTA PDKSKRKHMV EEHDGQTQKR GRKSARNVGE AKRAKRAKKS  180
GDEDSSMAIR NGSPTSCCTS DSDSNASLES ADGDGDADAR RPKGKGRAGR SATTEPQSIY  240
ARKRRERINE RLKILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIRLLSS DDTWMYAPIA  300
YNGMNIGIGI DLNMDR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G147800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443458.10.0transcription factor bHLH85
RefseqXP_021301980.10.0transcription factor bHLH85
RefseqXP_021301981.10.0transcription factor bHLH85
SwissprotQ84WK01e-50BH085_ARATH; Transcription factor bHLH85
TrEMBLC5YQV80.0C5YQV8_SORBI; Uncharacterized protein
STRINGSb08g019780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]