PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G103500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 24877.2 Da PI: 9.1619 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.4 | 4.6e-24 | 12 | 60 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n+ rqvtfskRr g+ KKA EL vLCda+va++ifs +g+l+ ++ Sobic.008G103500.1.p 12 RIDNSVSRQVTFSKRRRGLAKKARELAVLCDADVALLIFSDKGTLHHFA 60 8*********************************************997 PP | |||||||
2 | K-box | 82.9 | 6.9e-28 | 63 | 148 | 12 | 97 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 a + +++ ++ k+++++e Lq++qR+l+Ge+LesL+++e qqLe+q++++l++iRs+K+++ll++ieelq+ke l e+n L+k+ Sobic.008G103500.1.p 63 ARYGNMSYDHVKMRSKLEALQKSQRNLMGEQLESLTFREVQQLEHQIDSALRNIRSRKDHILLNSIEELQNKETFLMEQNSILEKE 148 5678999***************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-29 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.595 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-24 | 4 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.64E-32 | 4 | 72 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-25 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-23 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-25 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-25 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.084 | 65 | 155 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.8E-24 | 67 | 148 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRGRGKVEV RRIDNSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLIF SDKGTLHHFA 60 AYARYGNMSY DHVKMRSKLE ALQKSQRNLM GEQLESLTFR EVQQLEHQID SALRNIRSRK 120 DHILLNSIEE LQNKETFLME QNSILEKEKA ALGASSLHTT NTADSSTAVA TAALPNLNIC 180 PGDDSDEPGR AAAPPPPGAA ISLPWWMLQP PPAVSQRQEQ EQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-13 | 71 | 145 | 23 | 97 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-13 | 71 | 145 | 23 | 97 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-13 | 71 | 145 | 23 | 97 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-13 | 71 | 145 | 23 | 97 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G103500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975067 | 1e-118 | EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302331.1 | 1e-151 | MADS-box transcription factor 20 | ||||
Swissprot | Q2QQA3 | 2e-64 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | A0A1B6PCQ5 | 1e-165 | A0A1B6PCQ5_SORBI; Uncharacterized protein | ||||
STRING | Sb08g015555.1 | 1e-82 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14643 | 21 | 21 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 7e-35 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G103500.1.p |