PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.007G183050.1.p | ||||||||
Common Name | Sb2273s002010, SORBIDRAFT_2273s002010, SORBI_K024600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28104.6 Da PI: 6.5091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.3e-12 | 95 | 140 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f eLr +P+ +++ a+ L A YI +L Sobic.007G183050.1.p 95 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDRASLLAAAAAYIGEL 140 799***********************6.....49**************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.354 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-15 | 93 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-9 | 95 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.80E-6 | 95 | 126 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 95 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-11 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MDELVYPASS CSSPSPTSFS AAGHFEELEF VSWDVPEEWM EGNDWFDEPL ADGDEGCRSA 60 GNGDLSGSGE PPAPAPAPKR RGRKPGPRTN GPTISHVEAE RQRRDKLNRR FCELRAAVPT 120 VSRMDRASLL AAAAAYIGEL RDRVEQLEAE AKQAASAAVT TAAAAAATHH HHSFGLLQGK 180 LGLEVRMLAG LDAAALRLTT TTARHAPAHL MLALRSLDLQ VQHACVCRVN GVAVQDAVVD 240 VPAGLRDERG LRAALLHKLQ QSG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_B | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_E | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_F | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_G | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_I | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_M | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
5gnj_N | 2e-17 | 94 | 156 | 7 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.007G183050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002488895.1 | 0.0 | transcription factor MYC2 | ||||
Refseq | XP_021321554.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | C6JSR8 | 0.0 | C6JSR8_SORBI; Uncharacterized protein | ||||
STRING | Sb2273s002010.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 | Representative plant | OGRP17355 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-14 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.007G183050.1.p |
Entrez Gene | 8155625 |