PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G183000.1.p
Common NameSb07g025320, SORBIDRAFT_07g025320
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 280aa    MW: 29750.8 Da    PI: 7.021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G183000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12120165454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RRdr+N +f  Lr  +P+       K++ a+ L  A+ YI +L
  Sobic.007G183000.1.p 120 SHVEAERQRRDRLNRRFCDLRAAVPTV-----SKMDRASLLADATAYIAEL 165
                           799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9120165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-14120179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAISSSFISG IMDELACRSF FSSIPQSPAF FSGAGGQHPV LEFSYCDVPE QWLEDDDGGG  60
AEKLWDGTTA TVLGTGAATP SAPAAGNHDD VSDKLPAAPA PPKRRRGRKP GPRTVGPVLS  120
HVEAERQRRD RLNRRFCDLR AAVPTVSKMD RASLLADATA YIAELRGRAE RVEIEAKQQQ  180
AVTAVVPPEA FKEKLEVRML GQREAAALRL TTTAGTTPHD AAARLMVALC SLDLPVQHAY  240
VCRVGGTTTV QDAVVDVPVA LRDDGVLRAV LLRSLQGSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-17119178766Transcription factor MYC2
5gnj_B1e-17119178766Transcription factor MYC2
5gnj_E1e-17119178766Transcription factor MYC2
5gnj_F1e-17119178766Transcription factor MYC2
5gnj_G1e-17119178766Transcription factor MYC2
5gnj_I1e-17119178766Transcription factor MYC2
5gnj_M1e-17119178766Transcription factor MYC2
5gnj_N1e-17119178766Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RQRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G183000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444644.10.0transcription factor MYC4
TrEMBLA0A1Z5RBF90.0A0A1Z5RBF9_SORBI; Uncharacterized protein
STRINGSb07g025320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-22NACL-inducible gene 1