PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G182900.1.p
Common NameSb07g025310, SORBIDRAFT_07g025310
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 279aa    MW: 29532.3 Da    PI: 6.7853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G182900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12113158454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A+ YI +L
  Sobic.007G182900.1.p 113 SHVEAERQRREKLNRRFCDLRATVPTV-----SRMDKASLLADATAYIAEL 158
                           899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-11112163No hitNo description
SuperFamilySSF474599.95E-16112171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10113158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15113171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MQQQGAMNEL VPQSSFCSPA SPTSFFSAAA GHHSVLEFMS CGVPEQWLLG EEEALDNKHM  60
HDGSEWVAGG SHDSAGSDLS SNPPVAAVVM SDRTARSRRG RKPGPRSDNP GVSHVEAERQ  120
RREKLNRRFC DLRATVPTVS RMDKASLLAD ATAYIAELRG RVEQLEADAK QQVAARKLGG  180
GNPAMCPASG GLEEKLEVRM VGRHAAAVRL TTASTRHAPA LLMGALRSLD LPVQNACVSR  240
VGGAATVQDA VVDVPAALQD EGCLRAALLH VLQQDESA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-17112171766Transcription factor MYC2
5gnj_B4e-17112171766Transcription factor MYC2
5gnj_E4e-17112171766Transcription factor MYC2
5gnj_F4e-17112171766Transcription factor MYC2
5gnj_G4e-17112171766Transcription factor MYC2
5gnj_I4e-17112171766Transcription factor MYC2
5gnj_M4e-17112171766Transcription factor MYC2
5gnj_N4e-17112171766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G182900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282810.0KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.10.0transcription factor bHLH14
TrEMBLA0A1B6PIG00.0A0A1B6PIG0_SORBI; Uncharacterized protein
STRINGSb07g025310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-27bHLH family protein