PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.007G062200.1.p | ||||||||
Common Name | Sb07g004980, SORBIDRAFT_07g004980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 428aa MW: 44437 Da PI: 7.5475 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 318 | 355 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Sobic.007G062200.1.p 318 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 355 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.992 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.67E-5 | 316 | 359 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.5E-9 | 316 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 316 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MADHQEMIHP PAAATTGSTG HGHGGDWWTT AVSCSPDQLS AGFGAAGWSS AEGNNKSRSG 60 NAAASSESPG SNHSLATGGS SITFQDNAGA VADHGVVAVP SHPAVSGGLT ASCWNQPSYY 120 LDGSVAGNFH GYMSPRSDQA HHVGLRSPSS NHNNSLMLQD AHDPNQQFLS NLGLELLSSP 180 TSSSGGFRTS SLLRSLTEPS AAAAKTSSPG FMQQYHQQQT MNQVPAGSIR EALQFSNSTP 240 FWNPSAGSFA SAAEGATSLL PPSGKSRPAN FGVKSALDEG AGDSSNIIAK RTNTAPTPPP 300 LKKSRTGTPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHETIE YIKFLHEQVG 360 SLSAPYLKNR QQVPHHKVLR DGGEAAAANG ELTGRGLCLV PISSTFAVAS ETPLDFWTPF 420 GGPAAFR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.007G062200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT061283 | 1e-116 | BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320234.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | A0A1B6PFX4 | 0.0 | A0A1B6PFX4_SORBI; Uncharacterized protein | ||||
STRING | Sb07g004980.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 | Representative plant | OGRP12965 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.1 | 2e-44 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.007G062200.1.p |
Entrez Gene | 8069684 |