PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G039200.1.p
Common NameSb07g003330, SORBIDRAFT_07g003330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 336aa    MW: 35782.4 Da    PI: 10.1225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G039200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14101145347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Sobic.007G039200.1.p 101 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 145
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96894150IPR017930Myb domain
SuperFamilySSF466891.22E-1795150IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1897149IPR006447Myb domain, plants
SMARTSM007171.4E-1198148IPR001005SANT/Myb domain
CDDcd001672.72E-10101146No hitNo description
PfamPF002491.9E-12101145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-12101144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPRDSRPLGM RLFGVTIAPA PAPEADPPER DPSPNPPVAA REDVMRKCKS MGNLAALGAG  60
ADGGGGGADG GGAGDGYLSD GGLMQSSGKR RRAQERKKAV PWTEEEHRTF LAGLEKLGKG  120
DWRGIAKNFV TTRTPTQVAS HAQKYFLRQT NPNKKKRRSS LFDMMPRELS PTPNCPILPP  180
SMAKVHDVVA MTKQLQNSNL EGASSSNAAN VASQVGRDLP PVPSFKATNM DSSFSKFSHM  240
ERYWRTPYPF RPISRAPEGT SSSTPVAANI AVPASQANLT ACTSTFLSQR GDTSSLPPKG  300
DPPSEEDLEL TVAPPSQQNM TNMSSQNAVG VIQVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.57820.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G039200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0375200.0BT037520.1 Zea mays full-length cDNA clone ZM_BFb0175P21 mRNA, complete cds.
GenBankEU9726880.0EU972688.1 Zea mays clone 385981 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445045.10.0transcription factor KUA1
TrEMBLC5YGT60.0C5YGT6_SORBI; Uncharacterized protein
STRINGSb07g003330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Representative plantOGRP1297345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-38MYB_related family protein