PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G175500.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 547aa    MW: 59640.4 Da    PI: 6.3936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G175500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13352399355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           ++h + Er+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  Sobic.006G175500.3.p 352 KNHVMSERKRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLKELQ 399
                           5799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-9118162IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.139349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.05E-15352403No hitNo description
Gene3DG3DSA:4.10.280.107.0E-17353411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-18353419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-11353399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-16355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDGRVLQRRG EDEEDLQLRG VDSRPARHAE KRAAPGAVRS PPVRRVRPPR GAGAAGRLAV  60
AGGPRRHRVV LRHLHDLRLP AWPRVAGQEF REQRACLAVQ RAARRQQSLP PRAPSQVPTT  120
VKQSASIQSI ICIPLMGGVL ELGTTDTVLE DPDLVSRATA AFWEPQCPTY LEEQEPSPSS  180
NTPSANETSE AAADADDIVV FEDLDHNAME METITAVVEG HGQELREAES LSNASLEHIT  240
KEIDEFYSLC EEMDVQPLED GWIMDGSNFE VPSSPQPTPP GNLADGSRAT SFMAWTRSSQ  300
SCSDEAVAAV PVIEEPQKLL KKVVAGGGAW ANCGGGGVGT STTGAAQESG VKNHVMSERK  360
RREKLNEMFL ILKSLVPSIH KVDKASILAE TIAYLKELQR RVQELESSRE LTSRPSETTR  420
PITRQHGNKE SVRKKLCAGS KRKSPEFGGD AEKEHDPWVL PKDGTSNVTV AVSDRDVLLE  480
VQCRWEELLM TRVFDAIKGL HLDVLSVQAS APDGFMGLKI RAQFAGSGAV VPWMISEALR  540
KAIGKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357362ERKRRE
2358363RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G175500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423110.0AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318742.10.0anthocyanin regulatory R-S protein isoform X1
RefseqXP_021318743.10.0anthocyanin regulatory R-S protein isoform X1
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1Z5REW90.0A0A1Z5REW9_SORBI; Uncharacterized protein
STRINGSb06g025040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.12e-37bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]