PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G119400.1.p | ||||||||
Common Name | Sb06g020040, SORBIDRAFT_06g020040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 799aa MW: 91066.4 Da PI: 8.9032 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.5 | 6.9e-21 | 54 | 139 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fY eY++++GF v+k++s++ +g +++tfvC+k g ++ + + r+r + +tgCka+++vk + +++wev +eleHnH+ Sobic.006G119400.1.p 54 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKFNAsENHWEVVFVELEHNHP 137 6****************99988..9999**************99887...8999****************999***************9 PP FAR1 89 la 90 ++ Sobic.006G119400.1.p 138 CN 139 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-19 | 54 | 139 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-24 | 263 | 356 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.5E-6 | 533 | 576 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.73 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-4 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MDTLHSDPYS RSSLQLQVRD GSMSFENNST VLDKHEVVSP RVGMTFETVD LAYQFYLEYG 60 YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKFNA 120 SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP 180 NQNKDFMVKS FSQSNYSIDG AGKTGKLRFA EGDVEALLVF FDKMQAQNSN FFYNWDMDDE 240 GRLKNVCWVD ARSRVAYQHF CDVICFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG 300 DESPETFAWL FKKWLKCMND KAPEAIVTTH SRPVVKAVSE VFPNTRHRYN LWHIMKELPE 360 MSGRVEDKEA VSLRMKKVVY DTITSADFER EWVEMINQYN LHDNQWLTTL FEERAKWVPA 420 YVKDTFWAGI STVRRSERLE AFFDGYITPE TTIKTFIEQF DTAMKLRSDR EAYDDFRSFQ 480 QRPQVLSGLL FEEQFANVYT INMFQKFQDQ LKQLMNVNCT EVSRNGSIAT YTVTVIGKER 540 KFDYRVMYNS AEKEVWCICR SFQFKGILCS HALAVLKQEL VMLIPPKYIL DRWRKDYKCP 600 EEPKETPISP KAAKDTGKGS NPENIREDQA DNLYKHGHQY FADIVEMGAT DPDAMEYVLS 660 VMKEAKEKVR KFEESRKEKR PGESPVSAGK RVAKFSKPST EEVGNGTSVS TPTEAVASVT 720 VVSSAPMAAA PTMMAMAPPS AAVAPGMFLV PMHPHPLVFP PFPPAVPPAV APVAPPAAPA 780 TNVASNTSKK RKKRKVNN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 788 | 792 | KKRKK |
2 | 788 | 794 | KKRKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G119400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446663.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | C5YAF7 | 0.0 | C5YAF7_SORBI; Uncharacterized protein | ||||
STRING | Sb06g020040.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP16232 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-118 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G119400.1.p |
Entrez Gene | 8073582 |