PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G119400.1.p
Common NameSb06g020040, SORBIDRAFT_06g020040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 799aa    MW: 91066.4 Da    PI: 8.9032
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G119400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.56.9e-2154139190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                           +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk +  +++wev  +eleHnH+
  Sobic.006G119400.1.p  54 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKFNAsENHWEVVFVELEHNHP 137
                           6****************99988..9999**************99887...8999****************999***************9 PP

                  FAR1  89 la 90 
                           ++
  Sobic.006G119400.1.p 138 CN 139
                           76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1954139IPR004330FAR1 DNA binding domain
PfamPF105512.8E-24263356IPR018289MULE transposase domain
PfamPF044341.5E-6533576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.73544580IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MDTLHSDPYS RSSLQLQVRD GSMSFENNST VLDKHEVVSP RVGMTFETVD LAYQFYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKFNA  120
SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMVKS FSQSNYSIDG AGKTGKLRFA EGDVEALLVF FDKMQAQNSN FFYNWDMDDE  240
GRLKNVCWVD ARSRVAYQHF CDVICFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG  300
DESPETFAWL FKKWLKCMND KAPEAIVTTH SRPVVKAVSE VFPNTRHRYN LWHIMKELPE  360
MSGRVEDKEA VSLRMKKVVY DTITSADFER EWVEMINQYN LHDNQWLTTL FEERAKWVPA  420
YVKDTFWAGI STVRRSERLE AFFDGYITPE TTIKTFIEQF DTAMKLRSDR EAYDDFRSFQ  480
QRPQVLSGLL FEEQFANVYT INMFQKFQDQ LKQLMNVNCT EVSRNGSIAT YTVTVIGKER  540
KFDYRVMYNS AEKEVWCICR SFQFKGILCS HALAVLKQEL VMLIPPKYIL DRWRKDYKCP  600
EEPKETPISP KAAKDTGKGS NPENIREDQA DNLYKHGHQY FADIVEMGAT DPDAMEYVLS  660
VMKEAKEKVR KFEESRKEKR PGESPVSAGK RVAKFSKPST EEVGNGTSVS TPTEAVASVT  720
VVSSAPMAAA PTMMAMAPPS AAVAPGMFLV PMHPHPLVFP PFPPAVPPAV APVAPPAAPA  780
TNVASNTSKK RKKRKVNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1788792KKRKK
2788794KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G119400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446663.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLC5YAF70.0C5YAF7_SORBI; Uncharacterized protein
STRINGSb06g020040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1623233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-118FAR1-related sequence 6