PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G230600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 620aa MW: 70574.6 Da PI: 6.6987 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 298.8 | 1.4e-91 | 242 | 611 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+avs+++++ a++lL++++++as +gd++qRla++f+++L+arl++++ +l + l+ ++ +e l+a++l+ ++ + Sobic.005G230600.1.p 242 TLLINCAQAVSASNFRTAHELLKQIKQHASATGDATQRLAQCFAKGLEARLMGTGRQLWQLLTLEQPL---AIEYLKAYNLYMATCSFN 327 79*********************************************************999888887...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +++ + +I a+ g++++Hi+D++ +G+QW+ Ll+ +a+R++gpp++RiT++++ ++ +e + tg+rL k A+e+gvpf+f Sobic.005G230600.1.p 328 RVALFFNVMTIEHAMVGKSKLHIVDYGPHHGFQWAGLLRWMANREGGPPEVRITAISRLQPRscPSEGTDDTGRRLDKCAREFGVPFKF 416 **********************************************************9999999************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 ++ ++ ++e++++++L+++ +E+l+V ++ l +e+ + rd+vL+ +++++P+v++ +++h s+sFl+rf eal ys Sobic.005G230600.1.p 417 HA-ITAKWETISIDDLKTEADEVLVVVDLFSFSILREENIYFDGlsSRDTVLNNIRKMRPDVFIQGIMNCSH-STSFLTRFREALFSYS 503 **.6999*******************999988888777776665668*************************.899************* PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 alfd+l+a++pr+s+ r ++E+ +lg ++ n+vacega+ ++r e++++W+ r ++aG++++pl+ +++k k + k + + + + e+ Sobic.005G230600.1.p 504 ALFDMLDATIPRDSKLRPVLEQNMLGHSVLNLVACEGADVVNRPEKYRRWQVRNQRAGLRQLPLKPNIVKVLKDKVMKDHHKDFFISED 592 *************************************************************************9999998788****** PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 ++l++gW++r ++ S W Sobic.005G230600.1.p 593 GQWLLQGWMGRIFYAHSTW 611 ******************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 52.199 | 214 | 592 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-89 | 242 | 611 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MATTPEEFFM EGLMNLSPPS PSVLLDLPQM TNDVGQDSLC PDEIVLSYVS SVLMEDQSED 60 KLLCQDTDHP SLLQVQKPFS QILSSPSFST NSDNTVNRDN IEGARNLFQD CSGDQCTLRS 120 SLSIGALAAG SVLKGMEEAS RFLSEDNVFR KDQQLNQMTR ESGNSRVFKK RYNRDEDGEV 180 GRAYKVFMMM EELEEMFDKM MLRGYETCIE EMKKLRITKA DEAKNKKKGY NKRRSNVVDL 240 YTLLINCAQA VSASNFRTAH ELLKQIKQHA SATGDATQRL AQCFAKGLEA RLMGTGRQLW 300 QLLTLEQPLA IEYLKAYNLY MATCSFNRVA LFFNVMTIEH AMVGKSKLHI VDYGPHHGFQ 360 WAGLLRWMAN REGGPPEVRI TAISRLQPRS CPSEGTDDTG RRLDKCAREF GVPFKFHAIT 420 AKWETISIDD LKTEADEVLV VVDLFSFSIL REENIYFDGL SSRDTVLNNI RKMRPDVFIQ 480 GIMNCSHSTS FLTRFREALF SYSALFDMLD ATIPRDSKLR PVLEQNMLGH SVLNLVACEG 540 ADVVNRPEKY RRWQVRNQRA GLRQLPLKPN IVKVLKDKVM KDHHKDFFIS EDGQWLLQGW 600 MGRIFYAHST WVAEDTISE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-38 | 246 | 570 | 25 | 337 | Protein SCARECROW |
5b3h_A | 6e-38 | 246 | 570 | 24 | 336 | Protein SCARECROW |
5b3h_D | 6e-38 | 246 | 570 | 24 | 336 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G230600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317864.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1B6PU83 | 0.0 | A0A1B6PU83_SORBI; Uncharacterized protein | ||||
STRING | Sb05g027795.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP10800 | 3 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-110 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G230600.1.p |