PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G047200.1.p
Common NameSb05g003890, SORBIDRAFT_05g003890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 389aa    MW: 44425.7 Da    PI: 6.7058
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G047200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix833.9e-2675171186
              trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                           +Wt+++v++Li+a+++++++ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++ +
  Sobic.005G047200.1.p  75 KWTDSMVKLLITAVSYTGDDHGADSgggrknftimQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVAN 163
                           7*******************999877788889999**********************************************55999999 PP

              trihelix  79 cpyfdqle 86 
                            +++d+++
  Sobic.005G047200.1.p 164 PALLDSMN 171
                           99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2073197No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPGTFTMSMI RATEPDDFPG FQFKEHGKSD DHHHQHHSHH SKNCKSDGEE HDVAEDAIDT  60
PSGKGKKGSA WHRMKWTDSM VKLLITAVSY TGDDHGADSG GGRKNFTIMQ KKGKWKAISK  120
VMGERGCHVS PQQCEDKFND LNKRYKRLTD ILGRGTACNV VANPALLDSM NHLSDKMKDD  180
AKKILSSKHL FYEEMCSYHN NNRVNLPEDH ALQHSLLLAL RCKEEHDPPR DPSGDADEDD  240
QSADSDYEEN DEEQHPVHTT MMEASTHKRK RHSDVPLITS SSHEGSERSD PHGVTVDINK  300
TFTDATNMIL LQQDLASQAI EIQKRRLQIE AKELELAKQR LKWERFSKKK DREIEKMALE  360
NEHMMIENKR LELELRHKEL QLDLKLKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.102920.0embryo| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G047200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646920.0EU964692.1 Zea mays clone 280880 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449041.10.0uncharacterized protein LOC8070669
TrEMBLA0A1Z5RGS00.0A0A1Z5RGS0_SORBI; Uncharacterized protein
STRINGSb05g003890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-87sequence-specific DNA binding transcription factors