PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G381400.1.p
Common NameSb03g042110, SORBIDRAFT_03g042110
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 304aa    MW: 32363.4 Da    PI: 8.0671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G381400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19103152255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr ++ +g+++AeIrdp++   rkr +lg+f+taeeAa+a++ a+++l+g
  Sobic.003G381400.1.p 103 RFPGVRLRP-WGKFAAEIRDPRQ---RKRLWLGTFDTAEEAAAAYDDAALRLKG 152
                           689******.**********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-26103161IPR001471AP2/ERF domain
PfamPF008472.1E-12103152IPR001471AP2/ERF domain
SMARTSM003801.6E-30103166IPR001471AP2/ERF domain
PROSITE profilePS5103221.391103160IPR001471AP2/ERF domain
CDDcd000186.98E-13103161No hitNo description
PRINTSPR003671.1E-8104115IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-19104161IPR016177DNA-binding domain
PRINTSPR003671.1E-8126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSSVDSLTSG RSRREGPPLP RPKRVHVYFV DADATDTDDS SGDEDERAKR RVREVIHIDV  60
EAASAPTRAA QALVLPKKRR LPSQAAASAL VRRRASGAGF RRRFPGVRLR PWGKFAAEIR  120
DPRQRKRLWL GTFDTAEEAA AAYDDAALRL KGSHVVTKFP AEAPSSPWSR TRLRPRREKP  180
LETAEGAAEE RQEAVASAPA PAPAAAPASL DPQAEDGTAL ICPFTSPTSV LRFAADEVPA  240
APALPAFEFL YSGLGELCDL GAATAPSKAA AAAEFDCLPW WEGEDFVTAT GLTASAGAAV  300
SVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-18102166469ATERF1
3gcc_A6e-18102166469ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G381400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9752630.0EU975263.1 Zea mays clone 485995 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312343.10.0ethylene-responsive transcription factor CRF3
TrEMBLA0A1B6Q7E10.0A0A1B6Q7E1_SORBI; Uncharacterized protein
STRINGSb03g042110.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-14cytokinin response factor 5