PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G349700.1.p | ||||||||
Common Name | Sb03g039270, SORBIDRAFT_03g039270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 19588.8 Da PI: 6.0787 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Sobic.003G349700.1.p 60 FECKTCSKRFPSFQALGGHRTSH 82 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00067 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H Sobic.003G349700.1.p 108 HECAVCGLEFSMGQALGGHMRRH 130 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.14E-6 | 57 | 84 | No hit | No description |
Pfam | PF13912 | 4.1E-12 | 59 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 106 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-6 | 106 | 135 | No hit | No description |
Pfam | PF13912 | 2.2E-11 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.217 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTLTRHEAEE SKEMEGLRAH AEALLTLSAP ASSSSLGTGG TPPAPSSAAA RRAMAAEGVF 60 ECKTCSKRFP SFQALGGHRT SHTRLQARML SDPAAAAAAA ERDRARVHEC AVCGLEFSMG 120 QALGGHMRRH RGEAPPAAHD DDPAQAQPDR DMPDLNLPPL DDGSGGGPQQ SDYDRGSEPQ 180 LLNLLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G349700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971116 | 1e-129 | EU971116.1 Zea mays clone 357761 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456606.1 | 2e-94 | zinc finger protein AZF2 | ||||
TrEMBL | A0A1W0W0D6 | 1e-129 | A0A1W0W0D6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g039270.1 | 6e-94 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 4e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G349700.1.p |
Entrez Gene | 8085446 |