PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G337900.1.p
Common NameSb03g038210, SORBIDRAFT_03g038210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 278aa    MW: 29636.8 Da    PI: 6.3397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G337900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.42.5e-22116174359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg+ WrKYGqK+++g ++pr YYrC+++  gC+++++v++++++p + ei Y g+H+++
  Sobic.003G337900.1.p 116 DGFIWRKYGQKDINGHKHPRLYYRCAHKdqGCNATRRVQQTQDQPAAYEIAYYGDHTCK 174
                           9**************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-24106174IPR003657WRKY domain
SuperFamilySSF1182901.16E-21110174IPR003657WRKY domain
SMARTSM007741.3E-28114175IPR003657WRKY domain
PfamPF031061.2E-23116174IPR003657WRKY domain
PROSITE profilePS5081118.613116171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTLDTPAAVV LELMTMGQQS AAHLRDLLRA SSPAASSPHQ ELAAEILRCC GRVIDALRAT  60
TNGRKRKAAA AEYHQDAAAT GGATWSPPPP PPGPPLKRRA RGAEATREVT SGTTVDGFIW  120
RKYGQKDING HKHPRLYYRC AHKDQGCNAT RRVQQTQDQP AAYEIAYYGD HTCKGAATAW  180
QQLGAAPAVV DFGSNSWGSA DANNNGGSPA ASMSQGGWSP SASSEVGFDF EALHEWHDTA  240
APDPVMEFLD GCFGWESVLQ DSSDFGGLLL HDIATFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-191161741069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G337900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456549.10.0WRKY transcription factor WRKY24 isoform X2
TrEMBLC5XNA30.0C5XNA3_SORBI; Uncharacterized protein
STRINGSb03g038210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Representative plantOGRP1292445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.13e-22WRKY DNA-binding protein 66