PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G310000.1.p
Common NameSb03g035820, SORBIDRAFT_03g035820
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 285aa    MW: 31538.9 Da    PI: 4.4715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G310000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.61.2e-2381512128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                           ppG+rF Ptdee+v + L +++++++l  ++ i e d +++ Pw L +k ++++++ +fF+  +  +a+g+r++r  + +g+W+ +gk 
  Sobic.003G310000.1.p   8 PPGYRFVPTDEEVVEFCLLPRIQDQPLLPND-IIEDDPLSAPPWALLEK-HGRRHQAFFFAACQAMNAKGNRQKRtCAGQGTWQGQGKG 94 
                           9*************************77745.6677**********744.4567799******************7788********97 PP

                   NAM  90 kevlsk...kgel...................vglkktLvfykgrapkgektdWvmheyrl 128
                           k+  ++   +  +                    + k  L f++ +  kg +t Wvmhey++
  Sobic.003G310000.1.p  95 KRKRQQeegE--EevkkklrvpvrgsaetmeiEWDKYALNFHE-HGVKG-STGWVMHEYSI 151
                           7777664441..24566778888888888887889999***94.55554.8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-273162IPR003441NAC domain
PROSITE profilePS5100524.3687171IPR003441NAC domain
PfamPF023657.3E-188151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MATEHGFPPG YRFVPTDEEV VEFCLLPRIQ DQPLLPNDII EDDPLSAPPW ALLEKHGRRH  60
QAFFFAACQA MNAKGNRQKR TCAGQGTWQG QGKGKRKRQQ EEGEEEVKKK LRVPVRGSAE  120
TMEIEWDKYA LNFHEHGVKG STGWVMHEYS ITAPPELARS PVRVYCIRFS GHGRNAKKNS  180
RDAQHRGDDE FEDEEGGQVD DDADAAGAMA TATWSAAEED AALLVQEYLT AFPVAAVDVV  240
SANPADAADA GAGYDQDLPE LVDDDSFDFM NTLPDLVPRF DFSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G310000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456411.10.0NAC domain-containing protein 83
TrEMBLC5XKZ80.0C5XKZ8_SORBI; Uncharacterized protein
STRINGSb03g035820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP1783122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-08NAC domain containing protein 38