PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G216800.1.p
Common NameSb03g027570, SORBIDRAFT_03g027570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 455aa    MW: 50009.9 Da    PI: 6.3458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G216800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.88.9e-161360249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ie+ + r+ tf kRr g++K A+ LS+L++a+vav++ s++gk+  +
  Sobic.003G216800.1.p 13 FIEDGRDRSLTFFKRRSGLFKAASDLSTLTGARVAVVLESEHGKFSSF 60
                          79******************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-12263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.549464IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-8626IPR002100Transcription factor, MADS-box
CDDcd001204.08E-16763No hitNo description
SuperFamilySSF554559.55E-16873IPR002100Transcription factor, MADS-box
PfamPF003198.4E-181360IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-82641IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-84162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMLRRDRRSG VRFIEDGRDR SLTFFKRRSG LFKAASDLST LTGARVAVVL ESEHGKFSSF  60
GTPEAGPIVD AFLLGSAPTD LDITEADKAS ITNLQNEVFQ LEKEKTMEDK RKKENIARTN  120
NKIQEASKQA KYVYGNIEDL DATELFDMYC ELSRVKKEID DCLPTLLRGD KVEAGGHLRD  180
PSLLQPTWWR SMPPPQVATP PKYPWASFQA CFHQHPWLST STSVPTRSGS SLPNSMILPS  240
PLVPQNPLQH HYPLAPHSPP TSSVQFQAPK TLPTPMEAHN PYTNHIHGID INDNSSHPFS  300
FSPILSSSMT PQRSSLQMTP PLDDSFSLSL SPQISSPMHL GSSFQQQLPF NVQNYNSVLP  360
PQNYTNVGST LIHSHQLFYS NLSSPELNVE LGSIEKSGAT QVGDGGHNER FGLSNPPQSD  420
GGLDWMMPNS FYVGESSGGG DAGGNLGGLN SPWY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G216800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455936.20.0transcription factor RLM1
TrEMBLA0A1B6Q4N50.0A0A1B6Q4N5_SORBI; Uncharacterized protein
STRINGSb03g027570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-12AGAMOUS-like 28