PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G068700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 323aa    MW: 33714.9 Da    PI: 6.4202
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G068700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN353.37.6e-172117153261
                           SSSSS-TTS-..-TTT--HHHH---S--HHHHHHT--TT--...........-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTT CS
                  EIN3 153 qhcdppqrrf..plekgvepPWWPtGkelwwgelglskdqg..........tppykkphdlkkawkvsvLtavikhmsptieeireler 229
                             c+pp r+   + ++g +pPWWPtG+e+ww +  l  +            + p+  +  lkk  kv+vL a +kh++p++++i   +r
  Sobic.003G068700.1.p   2 PVCNPPLRQGqhQSKTGPPPPWWPTGSEDWWTTELLE-HLDlvaalssapvPVPFAPSYGLKKPQKVAVLVAIVKHLAPDFARIAAAVR 89 
                           679999886511567899*************964322.22223444466678999999******************************* PP

                           TSSSSTTT--SHHHHHHHHHHTTTTT-S--XX CS
                  EIN3 230 qskylqdkmsakesfallsvlnqeekecatvs 261
                            s     k s  e++ + s ln+e+++++++ 
  Sobic.003G068700.1.p  90 HSG----KLSISETDLWHSALNNERAKYTRLV 117
                           986....77999**************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1167681.57E-261113IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048733.0E-151109No hitNo description
Gene3DG3DSA:1.10.3180.102.5E-311116IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPVCNPPLRQ GQHQSKTGPP PPWWPTGSED WWTTELLEHL DLVAALSSAP VPVPFAPSYG  60
LKKPQKVAVL VAIVKHLAPD FARIAAAVRH SGKLSISETD LWHSALNNER AKYTRLVFIL  120
LPQQQQQGGV GGGGGGGGGV STDPGAAGSV FAVHSGNAGA SDGCELQVAN LPAGGSVSAP  180
ADGSRGEVVA AAELVVEKEQ RSDSDGVGVV SATDAPAGDD GLDQPVNNFP AGDGSTDKLA  240
WEEYGAGGRG NLAAREGTSR GRKLPMQSGA ARGSIRTRDV SFPTLEIYQI IVFGMCMLER  300
PSILAYHFFL LNPHSISVRH FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-15111128130ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G068700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5XPC80.0C5XPC8_SORBI; Uncharacterized protein
STRINGSb02g006580.11e-115(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15037818
Representative plantOGRP1700323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-08EIL family protein