PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G269500.1.p
Common NameSb02g030340, SORBIDRAFT_02g030340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 245aa    MW: 26396.2 Da    PI: 4.5381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G269500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1659109153
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                           + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ta+ Aa+a++aa +++
  Sobic.002G269500.1.p  59 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTADAAARAHDAAVLAI 109
                           579******************9...6445*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-1259110IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1660121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-2660122IPR001471AP2/ERF domain
PROSITE profilePS5103220.52160120IPR001471AP2/ERF domain
SMARTSM003809.2E-1860126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MCPIKKETTS AESGSPPCSS PSSSSASVMV MERHHQTTVW TSPPKRPAGR TKFRETRHPV  60
FRGVRRRGNA GRWVCEVRVP GRRGCRLWLG TFDTADAAAR AHDAAVLAIA GAGRACLNFA  120
DSAWLLAVPD SYASLAEVRH AVAEAVEEFQ RRGEAVEVEE EEEEDARSAT ASSTSSSPAS  180
DDDGGEESSS ATEDSPPFEM DMFSDMSWDL YYASLAQAML VEPPPTVTTA FCDDGVAEVP  240
LWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G269500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858991e-136AY785899.1 Sorghum bicolor cultivar BTX 623 SbCBF6 (CBF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462693.11e-177dehydration-responsive element-binding protein 1A
SwissprotA2Z3893e-89DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
SwissprotQ64MA13e-89DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLC5X6281e-176C5X628_SORBI; Uncharacterized protein
STRINGSb02g030340.11e-177(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.15e-26dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Oh SJ,Kwon CW,Choi DW,Song SI,Kim JK
    Expression of barley HvCBF4 enhances tolerance to abiotic stress in transgenic rice.
    Plant Biotechnol. J., 2007. 5(5): p. 646-56
    [PMID:17614953]
  3. Xiao BZ, et al.
    Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions.
    Mol Plant, 2009. 2(1): p. 73-83
    [PMID:19529831]
  4. Mito T,Seki M,Shinozaki K,Ohme-Takagi M,Matsui K
    Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice.
    Plant Biotechnol. J., 2011. 9(7): p. 736-46
    [PMID:21114612]
  5. Sun H, et al.
    ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.).
    Mol. Biotechnol., 2012. 52(2): p. 101-10
    [PMID:22161313]
  6. Huang J, et al.
    A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(3): p. 337-50
    [PMID:22930448]
  7. Lourenço T, et al.
    Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response.
    Plant Mol. Biol., 2013. 83(4-5): p. 351-63
    [PMID:23780733]
  8. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  9. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  10. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  11. Paul S,Gayen D,Datta SK,Datta K
    Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress.
    Plant Sci., 2015. 234: p. 133-43
    [PMID:25804816]
  12. Challam C,Ghosh T,Rai M,Tyagi W
    Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.
    J. Genet., 2015. 94(2): p. 231-8
    [PMID:26174670]
  13. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]
  14. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  15. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]
  16. Huo C, et al.
    Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice.
    Mol. Cell Proteomics, 2016. 15(4): p. 1397-411
    [PMID:26747563]
  17. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  18. Kudo M, et al.
    Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.
    Plant Biotechnol. J., 2017. 15(4): p. 458-471
    [PMID:27683092]
  19. He X, et al.
    A rice jacalin-related mannose-binding lectin gene, OsJRL, enhances Escherichia coli viability under high salinity stress and improves salinity tolerance of rice.
    Plant Biol (Stuttg), 2017. 19(2): p. 257-267
    [PMID:27718311]