PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G142000.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 491aa MW: 54620.5 Da PI: 4.7955

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G142000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.2	1.3e-17	156	245	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +k +++s+v k +l lpk+f+++h +++++ ++lede+g+ ++ +++++ +++GW++F+ ++g+k+gD+vvF+l+++++f Sobic.002G142000.1.p 156 VKHMLRSHVVKGFWLGLPKHFCDKHL--PNRDVGIVLEDENGEDHHTTY--LGYKQG--ISAGWRGFAIDHGIKVGDVVVFELVKSTKF 238 68899******************5..347788***********..999988..89*******************9987777 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v ++r+ Sobic.002G142000.1.p 239 --KVYIVRA 245 ..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-20	148	246	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-23	150	247	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.03E-26	153	244	No hit	No description
SMART	SM01019	5.4E-20	155	246	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.252	155	246	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-15	156	245	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MGIDQPIKRK RGRPAGSRST NSEMEEKMKL IKWRTDLLDS GAGSSESDKD DDAIPMDDEL 60 AIVVANEPAA LAIHCGDTDD DDGEVIPIEI VRPRRVGPKK RKLPGVPQTQ ISLIGSETQN 120 RILENIYCNV DENRESAVAR AEEIQSNLPA EHPSIVKHML RSHVVKGFWL GLPKHFCDKH 180 LPNRDVGIVL EDENGEDHHT TYLGYKQGIS AGWRGFAIDH GIKVGDVVVF ELVKSTKFKV 240 YIVRANGFTT ADVDSNLQNL EARKKGEEQS CEDVISEEDT TTNNREVPPS DGSSRNGIGI 300 SDSEIDFDDV TSFSDVNVIL DCLATDCEFH DRLRRTYYEL CCSQKSLLHG HLLKQLQPTL 360 VAGVIMETVS IADGIRACKA EASSREDFLV WKKTLESFEL LGMNVAFLLN RVNGLLGAAS 420 PSRESYAEWQ DKYEELKLER ARAGDKMKAL ELRLSNVKDV LQKVDSEMEE LQSSLKKSDE 480 ALQELASAPW *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MGIDQPIKRK RGRPAGSRST NSEMEEKMKL IKWRTDLLDS GAGSSESDKD DDAIPMDDEL  60
AIVVANEPAA LAIHCGDTDD DDGEVIPIEI VRPRRVGPKK RKLPGVPQTQ ISLIGSETQN  120
RILENIYCNV DENRESAVAR AEEIQSNLPA EHPSIVKHML RSHVVKGFWL GLPKHFCDKH  180
LPNRDVGIVL EDENGEDHHT TYLGYKQGIS AGWRGFAIDH GIKVGDVVVF ELVKSTKFKV  240
YIVRANGFTT ADVDSNLQNL EARKKGEEQS CEDVISEEDT TTNNREVPPS DGSSRNGIGI  300
SDSEIDFDDV TSFSDVNVIL DCLATDCEFH DRLRRTYYEL CCSQKSLLHG HLLKQLQPTL  360
VAGVIMETVS IADGIRACKA EASSREDFLV WKKTLESFEL LGMNVAFLLN RVNGLLGAAS  420
PSRESYAEWQ DKYEELKLER ARAGDKMKAL ELRLSNVKDV LQKVDSEMEE LQSSLKKSDE  480
ALQELASAPW *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	101	PRRVGPKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G142000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309566.1	0.0	B3 domain-containing protein Os01g0234100 isoform X1
Swissprot	Q0JP99	1e-156	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A1W0W3Z9	0.0	A0A1W0W3Z9_SORBI; Uncharacterized protein
STRING	Sb02g013060.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45
Representative plant	OGRP7667	8	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-40	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.002G142000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]