PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G080500.1.p | ||||||||
Common Name | Sb02g006700, SORBIDRAFT_02g006700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 26860.1 Da PI: 4.7775 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.4 | 1e-19 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien+ rqv fskRr+g++KKA+E+S+LC+a v ++fss gk + Sobic.002G080500.1.p 9 KPIENENARQVCFSKRRQGLFKKASEISILCGAMVGSVVFSSFGKSFS 56 78****************************************998655 PP | |||||||
2 | K-box | 13.7 | 2.7e-06 | 101 | 176 | 13 | 81 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLe........sLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 ++ +lqq l+ Lkk++e Lq+ ++ +Ge + +L l eLq ++ Le ++ + + K++ ++ + +e+q Sobic.002G080500.1.p 101 EYLELQQSLDSLKKKNERLQEATKKEMGEHMMqwlnanilELGLDELQDFQKLLE-AIDGVVKEKENNIVVEARETQ 176 56689************************86422222222689999999987776.566555555555544444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-26 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.698 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.504 | 102 | 197 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MERRKIEIKP IENENARQVC FSKRRQGLFK KASEISILCG AMVGSVVFSS FGKSFSFGHP 60 SIDDVVNRFL NLVTPDGPAS SGANHDNSLA VTGTVQGLNM EYLELQQSLD SLKKKNERLQ 120 EATKKEMGEH MMQWLNANIL ELGLDELQDF QKLLEAIDGV VKEKENNIVV EARETQGSAT 180 QPHMEIASAS QSQFGEHISA NSMASAAPSS SNGFIDGFEV NDPLLGGGDL YDICAPGNFP 240 NNQNHG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G080500.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459567.1 | 0.0 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | C5XDF2 | 0.0 | C5XDF2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g006700.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-19 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G080500.1.p |
Entrez Gene | 8078449 |