PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G537300.2.p | ||||||||
Common Name | Sb01g050000, SORBIDRAFT_01g050000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 92390.5 Da PI: 6.1524 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ Sobic.001G537300.2.p 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 160.4 | 1.3e-50 | 165 | 373 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aee+ +e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ e+l d++ W +++++ e+ g Sobic.001G537300.2.p 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGng 252 688999****************************************************7777777777.***********999999999 PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l++++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl+ Sobic.001G537300.2.p 253 GTVELIYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPNaasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLE 341 *********************************************999999998999******************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqce 205 +++++++lr+l++s+++ ++k+++ +l+++++ Sobic.001G537300.2.p 342 AWSVPEVLRPLYESSRVVAQKMTTVALRHLRQ 373 ***********************999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 8 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 26 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.27E-15 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 6.3E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.78E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 26.931 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 1.49E-74 | 159 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.6E-22 | 163 | 348 | IPR023393 | START-like domain |
SMART | SM00234 | 5.1E-38 | 164 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.06E-37 | 165 | 376 | No hit | No description |
Pfam | PF01852 | 2.6E-48 | 165 | 373 | IPR002913 | START domain |
Pfam | PF08670 | 1.1E-49 | 699 | 841 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE 60 CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDASNPS GLLAIAEETF TEFLSKATGT 180 AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS 240 LEVFTMFPAG NGGTVELIYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG 300 GPNAASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA 360 QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSVMG 420 GDGIEDVVVA CNSTKKIRNN SNAGITFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE 480 WADYNMDAYL ASSLKTSACS LPGLRPMRFS GGQMIMPLAH TVENEEILEV VRLEGQPLTH 540 DEALLSRDIH LLQFQLCTGI DEKSVGSSFQ LVFAPIDEHF PDDAPLISSG FRVIPLDMKT 600 DGVASGRTLD LASSLDVGSA APQASGDASP DDCNLRSVLT IAFQFPYEMH LQDSVATMAR 660 QYVRGVVSAV QRVSMAISPS QSGLNAGQRM LSGFPEAATL ARWVCQSYHY HLGLELLNQS 720 DEAGEALLKM LWHHPDAVLC CSFKEKPMFT FANKAGLDML ETSLVALQDL TLDKIFDESG 780 RKAIFSDISK LMEQGYAYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS 840 FV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.13643 | 0.0 | panicle |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G537300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ286526 | 0.0 | DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309716.1 | 0.0 | homeobox-leucine zipper protein HOX10 isoform X1 | ||||
Refseq | XP_021309722.1 | 0.0 | homeobox-leucine zipper protein HOX10 isoform X1 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A1Z5SCC9 | 0.0 | A0A1Z5SCC9_SORBI; Uncharacterized protein | ||||
STRING | Sb01g050000.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G537300.2.p |
Entrez Gene | 8059507 |