PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G464300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 323aa    MW: 35220.1 Da    PI: 5.8455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G464300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-102472871055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  Sobic.001G464300.1.p 247 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 287
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.424237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13241300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12243296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-12246291No hitNo description
PfamPF000103.8E-7247287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAVEDS ETMAQLLGVQ YSGNEQKQPT PTAMYWPGQE TDQYYSSAAY  60
PYYMQMQQHN SGASCYDHGY YGSNTFTMTG GDFFVPEEQI MAADPSFMLD LNLDFEYQDG  120
EGAGRGCGGG NTPAIGKRKR EDQKGESTTC TVPKKKSRST AIPVQKKGKK AQKGRCSRGN  180
QEESNGGGDV ARQQQCSSNG YLSDDESLEM TACSNVSSAS KKSSSSAGGK ARAGRGAAID  240
PQSLYARKRR ERINERLKVL QNLVPNGTKV DISTMLEEAA QYVKFLQLQI KLLSSDDMWM  300
FAPIAYNGVN VGLDLKISPP QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G464300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307194.10.0transcription factor bHLH84
TrEMBLA0A1B6QPS00.0A0A1B6QPS0_SORBI; Uncharacterized protein
STRINGSb01g043570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Representative plantOGRP1278633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-46bHLH family protein