PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G392700.1.p
Common NameSb01g037210, SORBIDRAFT_01g037210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 428aa    MW: 46197.9 Da    PI: 8.3372
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G392700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-14144203155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sobic.001G392700.1.p 144 SIYRGVTRHRWTGRYEAHLWDnTCRkEGqkRKgRQVYLGGYDKEDKAARAYDIAALKYWG 203
                           57*******************554454475337**********99************987 PP
2AP2491.5e-15246298156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t++eAa+a++ a++k++ge
  Sobic.001G392700.1.p 246 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEQEAAEAYDIAALKFRGE 298
                           57****************988532...5**********99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.34E-21144211No hitNo description
PfamPF008477.9E-11144203IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17144212IPR016177DNA-binding domain
PROSITE profilePS5103219.124145211IPR001471AP2/ERF domain
SMARTSM003801.6E-25145217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-16145212IPR001471AP2/ERF domain
PRINTSPR003671.1E-6146157IPR001471AP2/ERF domain
CDDcd000181.45E-23246307No hitNo description
PfamPF008472.4E-10246298IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17246306IPR016177DNA-binding domain
SMARTSM003805.0E-32247311IPR001471AP2/ERF domain
PROSITE profilePS5103219.058247305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18247305IPR001471AP2/ERF domain
PRINTSPR003671.1E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSPPTNGAIS LAYAPSSMML GAGGLTNPPL LPFDGFTDED FLAADAALLG GAGADQTLLL  60
LPSCPGTNGG GSSAAQGLGA ALACGEVTTA VAAGSISLAG QPAPGQQVLW EVMTAVAEDC  120
NANFSPSPPS PALPLVQTTS HRTSIYRGVT RHRWTGRYEA HLWDNTCRKE GQKRKGRQVY  180
LGGYDKEDKA ARAYDIAALK YWGDNATTNF PRENYIREIQ DMQNMNRRDV VASLRRKSSG  240
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFAT EQEAAEAYDI AALKFRGENA  300
VTNFEPSRYN LLAIAQREIP ILGKKLVQKP APEAEDQAAR SAPSFSHSQQ SSNSLPPYFL  360
TNLLEPLPSQ PSLAQPLPSY DNFGFWEPPS FYRPCPCPWG NPEQKVQLGR KMEIVNGLMQ  420
LGNSAAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G392700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701980.0BT070198.1 Zea mays full-length cDNA clone ZM_BFc0189L07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318170.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
TrEMBLA0A1B6QNK80.0A0A1B6QNK8_SORBI; Uncharacterized protein
STRINGSb01g037210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-106AINTEGUMENTA-like 5