PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165301.1.p
Common NameSb01g014430, SORBIDRAFT_01g014430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 317aa    MW: 36435.6 Da    PI: 10.5178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.77.1e-21371181299
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            ++rlv+p kfa+++  k   ++ +tle+  g +++v++   k+ gr+vl++GWk+Fv+a++Lk  Df+vFk++g +++ ++v +f+ 
  Sobic.001G165301.1.p  37 FHKRLVIPGKFAKHFRDK--IERNITLESFGGLTFDVQV--AKNLGRIVLQSGWKSFVSAHDLKKMDFLVFKYNG-MSR-MKVLIFDP 118
                           4568********777655..4457***************..*******************************988.444.69999885 PP
2B342.21.5e-132323151699
                           EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +v++kk+ + +   +  +s t  + + +g+sWe+++++   + ++++  l++GW +F+ +n+L+ gD++vF+  ++++  ++v+++rk
  Sobic.001G165301.1.p 232 MVFSKKYSDVClP-I--KS-TRWILQCHGKSWEMTCRIlvrKDQGEMKRLRNGWARFAGDNNLQLGDICVFEQLKTKKYMMNVHIIRK 315
                           6666666544422.2..22.33445679********9887444444499***********************7788999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.85826119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-2326121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2227126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-2027117No hitNo description
SMARTSM010191.2E-929119IPR003340B3 DNA binding domain
PfamPF023621.0E-1830117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-17211315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-17211315IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-14214314No hitNo description
SMARTSM010190.0035220316IPR003340B3 DNA binding domain
PfamPF023628.0E-12227315IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997255316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMRKPSKGCK ETDANYHRNY HTYDHGKHFF KVLIGDFHKR LVIPGKFAKH FRDKIERNIT  60
LESFGGLTFD VQVAKNLGRI VLQSGWKSFV SAHDLKKMDF LVFKYNGMSR MKVLIFDPSG  120
CEKVPPCFVA KNAISGELVK TPVTKKKAWK QRDRSRISIT SSRSLFNSSG GMTSSEDDEA  180
HSVPSYMLPQ GTSLDSMQKK KLKERLRSMC SEIPIYVCVM KKYNISGSSK SMVFSKKYSD  240
VCLPIKSTRW ILQCHGKSWE MTCRILVRKD QGEMKRLRNG WARFAGDNNL QLGDICVFEQ  300
LKTKKYMMNV HIIRKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165301.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321526.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1Z5S6060.0A0A1Z5S606_SORBI; Uncharacterized protein
STRINGSb01g014430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-28B3 family protein