PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165200.1.p
Common NameSb01g014420, SORBIDRAFT_01g014420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 313aa    MW: 35637.4 Da    PI: 9.1707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604e-19351141297
                           HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            + rl +p kf++++ g++ ++   ++le++ g +++v++   ++ g+ +l++GWkeFv a++L  gDf+vFk+dg+s+   +v +f
  Sobic.001G165200.1.p  35 FRERLAIPDKFVQRIrGLI-AN--SVKLESRCGHTFDVEV--ANSLGKLLLQTGWKEFVTAHDLSMGDFLVFKYDGTSRL--KVFIF 114
                           4568***********6555.34..5***************..********************************997666..66555 PP
2B347.33.6e-152263111299
                           HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +s+ + +p+ +ae +        + ++ + +  g+sWev++++ ++++g+  + kGWk+F+ +n+L+ gD ++F+l ++++ +++v+v+
  Sobic.001G165200.1.p 226 RSQTMDMPRVYAEVYlpF-----EDEILMLQCCGKSWEVRCRIqKGNPGTKRFMKGWKRFACDNKLQLGDLCLFELLENTKYTMNVHVV 309
                           566778888888777432.....237999999*********8878888888999**********************9999999****99 PP

                           -S CS
                    B3  98 rk 99 
                           r+
  Sobic.001G165200.1.p 310 RA 311
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2221119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.74624117IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-2224122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2025115No hitNo description
SMARTSM010194.0E-827117IPR003340B3 DNA binding domain
PfamPF023626.4E-1727114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-20207311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18210310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942215312IPR003340B3 DNA binding domain
CDDcd100178.23E-15217310No hitNo description
SMARTSM010191.0E-8218312IPR003340B3 DNA binding domain
PfamPF023623.5E-13226311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKPGKRSRE RHACFCSNHK DEKDKYFFKV LVGDFRERLA IPDKFVQRIR GLIANSVKLE  60
SRCGHTFDVE VANSLGKLLL QTGWKEFVTA HDLSMGDFLV FKYDGTSRLK VFIFDLSCCE  120
KVPQCRVKRN HICGRETREM QTEISSSCGD LPMNVTASSS TSLSDSSGDS ICPEDQKSQC  180
VPGYILQRGT CLTCVQMKKL KERVRASTST IPIYGCIIKK GNVQGRSQTM DMPRVYAEVY  240
LPFEDEILML QCCGKSWEVR CRIQKGNPGT KRFMKGWKRF ACDNKLQLGD LCLFELLENT  300
KYTMNVHVVR AK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304713.11e-171uncharacterized protein LOC8062495 isoform X1
SwissprotQ851V59e-88Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1B6QJB40.0A0A1B6QJB4_SORBI; Uncharacterized protein
STRINGSb01g014420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-19B3 family protein