PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G104500.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRF

Protein Properties

Length: 602aa MW: 62484.5 Da PI: 6.9816

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G104500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.4e-24	226	269	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Sobic.001G104500.1.p 226 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 269 69***************************************986 PP
2	QLQ	57.1	5.3e-20	158	194	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll +i++ Sobic.001G104500.1.p 158 GPFTPSQWIELEHQALIYKYLAANSPIPHSLLIPIRR 194 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.2E-11	158	194	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.3E-14	159	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.975	159	194	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	225	269	IPR014977	WRC domain
Pfam	PF08879	5.1E-20	227	268	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MDLMGGVVMD AGGGGAAELG LLGGGGSSSR LLKHGRGNAA AGGEDHGWGG GVGGGRAKQA 60 RTATASVVAG DVVEAAKAAA APFLLGSCSP GHGGEQMLSF SSATAAASSC ASTAAVAAAV 120 AADGGAMPLY YGTPASCSGL SSVSLSTSMQ GAMARVRGPF TPSQWIELEH QALIYKYLAA 180 NSPIPHSLLI PIRRSLASSP YPPSYFGTST LGWGSFQLGY SGNADLEPGR CRRTDGKKWR 240 CSRDAVADQK YCERHMNRGR HRSRKHVEGQ PGHAAKAMSA VVAAAATQPA ALAGAGATAA 300 GLTVNQHQQP AKSYATGAAD PCSLQYNREL VNKQNESENM QDSDNLSMLT SMTTGNTGSV 360 FPFSKQNNPF EVTSSRPEFG LVSSDSLMSS PHSSLENVNL LSSQSLNEHQ SSATLQHFVD 420 WPRTPAQGGL SWPEAEDMQA QRSQLSISAP MASSELSSAS TSPIHEKLML SPLKLSREYS 480 PTGLSIAANR DEVSQLEATW ATMFRDSSMG GPLGEVLNKN GNVEAKNCLS APLNLLTDYW 540 DSSHGMESSP VGVLQKTTFG SVSSSTGSSP RIENHGAYDG ISNLRDDLGS IVVSHPSIRF 600 V*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MDLMGGVVMD AGGGGAAELG LLGGGGSSSR LLKHGRGNAA AGGEDHGWGG GVGGGRAKQA  60
RTATASVVAG DVVEAAKAAA APFLLGSCSP GHGGEQMLSF SSATAAASSC ASTAAVAAAV  120
AADGGAMPLY YGTPASCSGL SSVSLSTSMQ GAMARVRGPF TPSQWIELEH QALIYKYLAA  180
NSPIPHSLLI PIRRSLASSP YPPSYFGTST LGWGSFQLGY SGNADLEPGR CRRTDGKKWR  240
CSRDAVADQK YCERHMNRGR HRSRKHVEGQ PGHAAKAMSA VVAAAATQPA ALAGAGATAA  300
GLTVNQHQQP AKSYATGAAD PCSLQYNREL VNKQNESENM QDSDNLSMLT SMTTGNTGSV  360
FPFSKQNNPF EVTSSRPEFG LVSSDSLMSS PHSSLENVNL LSSQSLNEHQ SSATLQHFVD  420
WPRTPAQGGL SWPEAEDMQA QRSQLSISAP MASSELSSAS TSPIHEKLML SPLKLSREYS  480
PTGLSIAANR DEVSQLEATW ATMFRDSSMG GPLGEVLNKN GNVEAKNCLS APLNLLTDYW  540
DSSHGMESSP VGVLQKTTFG SVSSSTGSSP RIENHGAYDG ISNLRDDLGS IVVSHPSIRF  600
V*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G104500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067085	0.0	BT067085.1 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466526.2	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	C5WLZ4	0.0	C5WLZ4_SORBI; Uncharacterized protein
STRING	Sb01g009330.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68
Representative plant	OGRP3357	12	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-49	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Sobic.001G104500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]