PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G084000.1.p
Common NameSb01g007570, SORBIDRAFT_01g007570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 332aa    MW: 34373.8 Da    PI: 6.6787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G084000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.8e-33147204259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Sobic.001G084000.1.p 147 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSTDPSVVITTYEGQHCHH 204
                           8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33131204IPR003657WRKY domain
SuperFamilySSF1182903.14E-28138205IPR003657WRKY domain
PROSITE profilePS5081130.228141206IPR003657WRKY domain
SMARTSM007745.3E-38146205IPR003657WRKY domain
PfamPF031061.1E-25147204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGAAGDRSE DVGADWPFGG GAADAFTEYS SVFAELGWPG GLLASGELPV LDLPDPAAPL  60
PSSSQLLSIE PSEDPAPARS GDAGASSSSS GDGDGAAPGN DDDDRKAAPA AEAAGRKPAA  120
ATAKKGQKRP RQPRFAFMTK SEIDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTNSKCTVK  180
KRVERSSTDP SVVITTYEGQ HCHHIGPFQR GGGGGGGGAA TARYHSAAAV ALAEQMSSSS  240
SFIPARQLYS LPPLHPPQSS LSSEAVVSSA ATTSFHQHVN DGDELRQASY SSRVSMAQSP  300
STPSSVPPAI SVEKAGLLDD MVPHGVRHGT P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26137205876Probable WRKY transcription factor 4
2lex_A1e-26137205876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G084000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654470.0EU665447.1 Triticum aestivum WRKY23 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463856.10.0probable WRKY transcription factor 48
TrEMBLC5X0720.0C5X072_SORBI; Uncharacterized protein
STRINGSb01g007570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-48WRKY DNA-binding protein 57