PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_24206.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 423aa MW: 46968.9 Da PI: 5.7259 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 109.5 | 2.3e-34 | 86 | 187 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 klfqrlw++eDe+ lL+G++++++++g + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgk+++ Sme2.5_24206.1_g00001.1 86 KLFQRLWTDEDEVELLRGFLEYTTQRGLnnssqH--HhyDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMTSGKDFA 169 579************************9865422..2369********************************************** PP DUF573 80 fskehdqkifelskkiWg 97 f+++hdq +fe+s+kiW Sme2.5_24206.1_g00001.1 170 FKSAHDQLTFEISSKIWS 187 *****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.6E-32 | 88 | 187 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSFDPMAHQS DDNLDYDVDV DGDDDSNSSP SVAGEVTIAV AGVTNSDSAS IQLNRKRPRI 60 DDFAIPVILP GMTGKKPAGT FDESRKLFQR LWTDEDEVEL LRGFLEYTTQ RGLNNSSQHH 120 HYDTTAFYDQ IKSKFQLDFN KNQLVEKLRR LKKKYRTVMS KMTSGKDFAF KSAHDQLTFE 180 ISSKIWSRGG SYDRSSPGGS VGFSAQQEDG GFDDEDHLNP TPNPNPNSDS IVIYHSPKFN 240 LNSNPNGIDI KTARSRIRSS PAPKAIKVEQ QSYLPSGART IRPTPMPMPM PTQIPTPTPT 300 TNSIPVAAAP VAEFAPAPTT VAAPVPSLVE ETVRNCVTPI FKELLNNFMN MNGPARGFGF 360 GGMGMSPFPL GFGGGAMSME MMGDEKWRKQ QMLELEVYLK RLELIQEQVK EQLEELRSME 420 SKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230126.1 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A3Q7EMN3 | 0.0 | A0A3Q7EMN3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g097890.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4052 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 8e-47 | DNA-binding storekeeper protein-related transcriptional regulator |