PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_18610.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 145aa MW: 16796.9 Da PI: 9.3177

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_18610.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.6	1.1e-13	53	127	11	89
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 l ++ +++ k+fa++ ++ e+k ++l +e+g++W v++ + ++ + +++GW +F ++n+L +g+ Fkl++ + Sme2.5_18610.1_g00001.1 53 LHTNFMTIAKRFAARTNIF--EQKNMRLVNEKGKEWGVEI--EYNRPIVHIKRGWAKFQRENKLAVGEAYHFKLIQGHA 127 45678******999666..4458***********..77777899*********************997533 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.63E-15	39	131	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-15	41	132	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.335	43	137	IPR003340	B3 DNA binding domain
CDD	cd10017	6.91E-9	44	134	No hit	No description
SMART	SM01019	0.0015	46	137	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-11	53	130	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
DKELEQQSNT GTDKDVGKDN SGSVEDAPNY SSRHNLVSFD CDDPYFEIVI KKLHTNFMTI 60 AKRFAARTNI FEQKNMRLVN EKGKEWGVEI EYNRPIVHIK RGWAKFQREN KLAVGEAYHF 120 KLIQGHAANV LQVHKIPTPS SLRYY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015162984.1	6e-47	PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBL	M1DLV3	8e-51	M1DLV3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400091092	1e-51	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11726	4	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	2e-08	B3 family protein