PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_16564.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 25965.2 Da PI: 7.1482 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.5e-20 | 47 | 100 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ Fe ++++ e++++LA++l+L+ +qV vWFqNrRa++k+ Sme2.5_16564.1_g00001.1 47 KRKLSEEQVNLLERSFEDTPKLGSERKAKLASELDLDPQQVAVWFQNRRARWKN 100 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.9 | 3.6e-35 | 46 | 136 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kr+ls+eqv+lLE+sFe + kL +erK++la+eL+l+p+qvavWFqnrRAR+k+k lE +y++Lk++++ e +rLe e ++ Sme2.5_16564.1_g00001.1 46 RKRKLSEEQVNLLERSFEDTPKLGSERKAKLASELDLDPQQVAVWFQNRRARWKNKTLEDEYSKLKSHHEIAIVEICRLEIEILKI 131 8*****************999***************************************************************** PP HD-ZIP_I/II 88 reelk 92 +e+l Sme2.5_16564.1_g00001.1 132 KEQLF 136 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.184 | 41 | 101 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.13E-17 | 41 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-18 | 44 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.77E-16 | 46 | 101 | No hit | No description |
Pfam | PF00046 | 4.5E-17 | 47 | 100 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 48 | 108 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 76 | 99 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVMISQYYPG IYNQLVPNQG FSSEEGKPWR RRKKNKGETG NSGVVRKRKL SEEQVNLLER 60 SFEDTPKLGS ERKAKLASEL DLDPQQVAVW FQNRRARWKN KTLEDEYSKL KSHHEIAIVE 120 ICRLEIEILK IKEQLFEAQK EIQRLSLEHN CPRVSNNNST LHQVSMEQPH FLGEFGMEEI 180 LMDDNIFRVA DSVFDAQNTS HTSSSLNRAA TFSWGIWNGG NINE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 47 | RRRKKNKGETGNSGVVRKR |
2 | 31 | 48 | RKKNKGETGNSGVVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 6e-93 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234617.1 | 5e-82 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 2e-55 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A3Q7FG29 | 1e-80 | A0A3Q7FG29_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g034150.1.1 | 2e-81 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-57 | homeobox protein 21 |
Publications ? help Back to Top | |||
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