PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13609.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 433aa    MW: 50062.7 Da    PI: 6.4562
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13609.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-153424151289
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++ +++pk+fa++ ++ + +   ++l +e+g++W v++  + +++++ +++GW +F ++n+L +g+ + Fkl++ + 
  Sme2.5_13609.1_g00001.1 342 HTNFMTIPKRFATRTKIFEWK--NMRLVNEKGKEWGVEI--EYNGRAVHIKRGWAKFRRENKLPVGEACRFKLIQGHA 415
                              45679*******999877655..6***************..88888999***********************997533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-146107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-146107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-89102No hitNo description
PROSITE profilePS5086311.19410105IPR003340B3 DNA binding domain
SMARTSM010193.1E-711105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-17328419IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-18330420IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393331425IPR003340B3 DNA binding domain
CDDcd100172.76E-11332422No hitNo description
SMARTSM010194.1E-10334425IPR003340B3 DNA binding domain
PfamPF023623.5E-13341418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLFDPDKTPA FFKILLSAET FTNEMQLPSC FIKQNKKMLT KNCLLKTDVA RMWWEAEIVR  60
EKVNYFIHEG DWPQFVLYHQ LKQGDVLLFF LVEKSTFHVQ LYTKKCCQNI VQKRLVVYEE  120
LSSSSREESA GPLKRARKMV TSDTEKRSVD KSSNDESKYE DEPHCNNLKR ENASLGLVSC  180
KQTIAYRKVV EIEYPIEADG SLVILDHSTE NLSHGPLAEK RKRKRQGEGF PINIQTNATI  240
IEEEENDIAV NLQIHANVTE EEDDDISVNL QSNANIIEVE ESHEICEGGK ELEQQPNIGT  300
DKDIGKDNSG SEEEAPNYSS RHSLVNFDCD DPYFEIVIKK SHTNFMTIPK RFATRTKIFE  360
WKNMRLVNEK GKEWGVEIEY NGRAVHIKRG WAKFRRENKL PVGEACRFKL IQGHAANVLQ  420
VHKIPTPRSL QYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.19e-70PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV32e-82M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910924e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-10B3 family protein