PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10149.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 49184.5 Da PI: 7.3828 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 246 | 292 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L Sme2.5_10149.1_g00003.1 246 KNHVEAERQRREKLNNRFYALRSVVPNV-----SKMDKASLLANAVTYINEL 292 589************************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-36 | 20 | 170 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.602 | 243 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-18 | 246 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.01E-15 | 246 | 297 | No hit | No description |
Pfam | PF00010 | 8.6E-11 | 246 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 247 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-16 | 249 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MQDILSTSSS SSPPSLLNTL QKRLQFIIQS RQEWWVYSIF WQASKDGNGR LIFSWGDGYF 60 HGTKDKVCIT SADNNNVGVG DTEMFYTVSA PSCFVLEDDL IVHTYSSGSY VWLNNYYELQ 120 IYNFDRAKEA HLHGIRTLLC VSTPHGVIEL GSADVIQENL EFVQLITSLF GLGKQINNNH 180 GLSRFNFAPL GDHNKDTKSN VEMLITGNKS SDSGNSDYDN ESSAIKYAHS PKKRGRKSNS 240 SSTTMKNHVE AERQRREKLN NRFYALRSVV PNVSKMDKAS LLANAVTYIN ELKAKVEEFK 300 AKVNELESSM KNQYQKPASR NTVQEMYDSP STSSAVVDRV NRINSSFAWC GNGAYGMEIE 360 VKIIGVEAMV RVHSPNVNYP CTRLMNVLSE LEFQIHHASV SCVKDMMLQD VVIGVPHNLI 420 NEEAIKSVIL TKLSVAYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-20 | 18 | 170 | 7 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-20 | 18 | 170 | 7 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-20 | 18 | 170 | 7 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-20 | 18 | 170 | 7 | 192 | Transcription factor MYC3 |
5gnj_A | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_B | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_E | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_F | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_G | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_I | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_M | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
5gnj_N | 1e-21 | 247 | 316 | 8 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162598.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | M1AWG4 | 0.0 | M1AWG4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400031899 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 5e-68 | bHLH family protein |