PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07559.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 1108aa MW: 122661 Da PI: 6.5927 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.5 | 3.9e-21 | 134 | 233 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v Sme2.5_07559.1_g00001.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSV 218 99*****************************9545444.38********************************************* PP EEEE-SSSEE..EEEEE CS B3 81 vFkldgrsefelvvkvf 97 +F ++++++l+++++ Sme2.5_07559.1_g00001.1 219 LFI--RDEKQQLLLGIR 233 ***..457777888876 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ Sme2.5_07559.1_g00001.1 260 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343 799******************************99879********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.05E-43 | 124 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 125 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.70E-18 | 133 | 225 | No hit | No description |
Pfam | PF02362 | 6.3E-19 | 134 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-20 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.1E-34 | 260 | 343 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.3E-7 | 996 | 1082 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.821 | 997 | 1081 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.08E-6 | 1010 | 1075 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1108 aa Download sequence Send to blast |
MKTSAGVQQQ QHTVNGNNPA EVEKKSINQE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS 120 DLSMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH 180 DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRWANRQPT 240 NLSSSVLSSD SMHIGILAAA AHASANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGEKRNRVSI 360 WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDYSDLDGL FKRTMPWLGD DFGMKDPQGL 420 PGLSLVQWMN MQQNPSLANS MQPNYLHSLC GSVLQNVGGG ADLSRQLGLP APQQNTLQFG 480 SQRPTQQGQQ LDQLQKLPTT TLSPAGSIMQ SQQQLSDISQ QPRQNLINQS VPTNHVQAQL 540 LQAQSLAQSQ NVLQQQQSFQ NQLQRNLPQN RPQQQQVMNQ TQQQSFMPPQ PSDPPNQQLH 600 FSDNQIPMQL LQKLHQQQQS LLAQQSLMQQ TSQLGPIQDQ QKQLLDVSQN FSRSLATSQM 660 LDMSQTTSTS TSLSQSQVAQ QQMTINNTQP NLRFAQPNQH MKQQQQQGIL PELPGQVGQV 720 LPPTTNQLSA NCSSYLTGPA GGGQSVITDD IPSCSTSPST NNCLSAVQPI MNGRIHRGTA 780 AADETTQSSL PLLSSSGLEA MSPNRNLVKD LQQKSDVKPS LNISKSHNHG FLTPQTYLST 840 AVPQMDYLDS SSSATSVCFS QNDVQLPQTT NPMSFSSQPV VFRDSQDGEV QGDPRNSVAF 900 GANMDNQLGI PIMPDSLITN SLVGSRKDVS NNISSGGGML SSYENPKDAQ PELSSSMVSQ 960 SFGVPDMAFN SIDSTINEGS FMNRGAWAAP PQMPRMRTYT KVYKRGAVGR SIDITRYSGY 1020 EELKQDLARR FGIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ 1080 EVQQMSLDGD FGNNVQNQAC SSSDGGNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-169 | 23 | 364 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM130544 | 0.0 | HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580257.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
TrEMBL | A0A2G3BYJ1 | 0.0 | A0A2G3BYJ1_CAPCH; Auxin response factor | ||||
STRING | Solyc07g016180.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |