PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05193.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 324aa MW: 37437.9 Da PI: 9.4961

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05193.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.6	4.4e-20	56	144	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sessstcpyfd 83 W++qe+++Li +r e+e++++++k k+lWe v+++m e+gf+r+ +qCk+kw+ l + yk + ++k+t +++ ++pyfd Sme2.5_05193.1_g00001.1 56 WSNQETRDLISIRGELEKEFSSAKrsNLKNLWEIVAARMNEKGFRRNGEQCKNKWKILLTHYKTYLQPKGKETsdPDNGGQFPYFD 141 *******************86522669*******************************99999988634677889*** PP trihelix 84 qle 86 +l+ Sme2.5_05193.1_g00001.1 142 ELH 144 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.13	48	114	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.8E-5	52	114	IPR009057	Homeodomain-like
Pfam	PF13837	1.5E-19	55	146	No hit	No description
CDD	cd12203	2.88E-17	56	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MFGGNNENLG PFPQHLMLPP HPLHLFPGGS LSAAAVGGSS SSGLGRDDEF PKRALWSNQE 60 TRDLISIRGE LEKEFSSAKR SNLKNLWEIV AARMNEKGFR RNGEQCKNKW KILLTHYKTY 120 LQPKGKETSD PDNGGQFPYF DELHALFSPN TNTVQRVQLE SEAGSQQTRK RPRTKEISGD 180 EEVYAYESDE VKLARSNVAP KKNIEKEKRS RTSNAEKSST QANTGSNSTG RAGDSIQEML 240 KEFLQQQLKI EMQWRETMEK RAREREVFEQ EWRSSMEKLE RERMMIEQSW REREEQRRMR 300 DESRAEKRDA LLTTLLNKLI GENP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013276	1e-135	BT013276.1 Lycopersicon esculentum clone 134854R, mRNA sequence.
GenBank	HG975520	1e-135	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006367770.1	1e-150	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	M0ZZI8	1e-149	M0ZZI8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400011408	1e-150	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	5e-34	Trihelix family protein