PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05072.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 219aa MW: 23983.4 Da PI: 10.4014 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 192.8 | 4e-59 | 55 | 219 | 133 | 301 |
GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGa 218 +++ ++++ +k+kk + k+ r+++ k k +++++++++skk ++++++ + k+ v s D s+lP+P CsCtG+ Sme2.5_05072.1_g00004.1 55 VKFK-AKSQKIKKNKKPPMKGTRETVSKLLKVERPENEPSSSKKPKREARCG--EATVTKNPTSVYGRASADFSGLPPPFCSCTGV 137 2222.34455566666677788888888889999988777776666666654..6677778888899******************* PP GAGA_bind 219 lrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +r+CYk G GGWqS+CCtt++S yPLP ++ ++g R grKm +ga++klL La+ GydlsnpvDLkdhWAkHG nkf+t++ Sme2.5_05072.1_g00004.1 138 SRRCYKCG-GGWQSSCCTTSLSEYPLPLNPSKPGNRKPGRKMTNGAYNKLLCTLATGGYDLSNPVDLKDHWAKHGSNKFITLK 219 ******99.9***********************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.3E-32 | 1 | 219 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.6E-52 | 56 | 219 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MASQVNHKEE TFDSHFPPIH QDNFPPATKF GSRSKPCAAV PIRSVAPTGE QNVDVKFKAK 60 SQKIKKNKKP PMKGTRETVS KLLKVERPEN EPSSSKKPKR EARCGEATVT KNPTSVYGRA 120 SADFSGLPPP FCSCTGVSRR CYKCGGGWQS SCCTTSLSEY PLPLNPSKPG NRKPGRKMTN 180 GAYNKLLCTL ATGGYDLSNP VDLKDHWAKH GSNKFITLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009521 | 0.0 | AP009521.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0068N03, complete sequence. | |||
GenBank | AP010257 | 0.0 | AP010257.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0172P19, complete sequence. | |||
GenBank | AP010798 | 0.0 | AP010798.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0011I05, complete sequence. | |||
GenBank | FJ982306 | 0.0 | FJ982306.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. | |||
GenBank | FJ982307 | 0.0 | FJ982307.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds. | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266119.1 | 1e-134 | GAGA-binding transcriptional activator | ||||
TrEMBL | H1ZN90 | 1e-132 | H1ZN90_SOLLC; GAGA-binding transcriptional activator | ||||
STRING | Solyc08g076230.1.1 | 1e-133 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13714 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 2e-47 | basic pentacysteine 7 |