PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04775.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARR-B | ||||||||
Protein Properties | Length: 672aa MW: 74320.7 Da PI: 5.8907 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.2 | 5e-25 | 219 | 268 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr++W+ eLH++Fv+av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQ Sme2.5_04775.1_g00009.1 219 KPRVVWSVELHQQFVSAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQ 268 79*******************.***************************** PP | |||||||
2 | Response_reg | 76.1 | 1.3e-25 | 39 | 147 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 vl+vdD+p+ +++l+++l++ y ev+ a +e al +l+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ Sme2.5_04775.1_g00009.1 39 VLVVDDDPTCLKILEKMLRNCLY-EVTKANRAELALSMLRENRngFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKD 122 89*********************.***************99999***********************6644.8************* PP HHHHHHHTTESEEEESS--HHHHHH CS Response_reg 85 dalealkaGakdflsKpfdpeelvk 109 + + + Ga d+l Kp+ +e+l + Sme2.5_04775.1_g00009.1 123 VVMKGVTHGACDYLIKPVRIEALKN 147 *********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.8E-166 | 18 | 662 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 8.5E-43 | 36 | 160 | No hit | No description |
SuperFamily | SSF52172 | 1.57E-35 | 36 | 160 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.1E-30 | 37 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.851 | 38 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.4E-23 | 39 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.90E-28 | 40 | 153 | No hit | No description |
SuperFamily | SSF46689 | 1.22E-15 | 216 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 218 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-21 | 219 | 269 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 221 | 268 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MNLGVGSVVK NMSGASCSVS WKSGGSDRVS DQFPAGLRVL VVDDDPTCLK ILEKMLRNCL 60 YEVTKANRAE LALSMLRENR NGFDVVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS 120 KDVVMKGVTH GACDYLIKPV RIEALKNIWQ HVIRKKKHEW KDKDFDQSTS LEDGDQQQKL 180 PEDVDYSSSA NEGSWKSSKR RKEEEDETEE RDDSSTLKKP RVVWSVELHQ QFVSAVNQLG 240 VEKAVPKKIL ELMNVPGLTR ENVASHLQFL SEVLIGGNHV LQKYRLYLRR VQHQNGLNNS 300 YMGHQEATYG TMTPFNGLEL QALAATGQLP AQSLATLQAA ALGRSATKSA ITMPLVDQRN 360 LFSFENPKLR FPDGQQQLNN SSKQINLLHG IPTTMEPKQL ADLHQSSQSF VAMNMQGNAR 420 MQQNNTLLMH MSQQQPPPSR AQMLNETSNV QVSRPPLSLS QPAAVLSRNT IVDNVRGPLY 480 NPVSQTSSMV DFSLNQTTEL QNNSFPLSSN SGMSTQTSKR FLQEEVNSDI KGSRGFPPGY 540 DIFEELHQQK TQDWGLPNAG TSFGASGHSS IPGTLDVSQS MLVQQGISSM KKNGQNGNSP 600 MAGAQLNLFS GGNLLTVKSE QLPDTSYQGS FFPEQFGQDD LMSALLKQQE SVGQVETDFG 660 FDGYPPLDNL PV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-18 | 218 | 291 | 4 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015076165.1 | 0.0 | two-component response regulator ARR1-like isoform X1 | ||||
Refseq | XP_027772716.1 | 0.0 | two-component response regulator ARR1-like isoform X2 | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | A0A3Q7GNQ7 | 0.0 | A0A3Q7GNQ7_SOLLC; Two-component response regulator | ||||
STRING | Solyc05g054390.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-167 | response regulator 1 |